> Potassium voltage-gated channel, Shaw-related subfamily, member 1 (KCNC1)
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UGID:1506375     UniGene Hs.552896     Homo sapiens (human)   KCNC1 Order cDNA clone, Links
Potassium voltage-gated channel, Shaw-related subfamily, member 1 (KCNC1)

Human protein-coding gene KCNC1. Represented by 69 ESTs from 36 cDNA libraries. EST representation biased toward infant. Corresponds to 2 reference sequences (different isoforms). [UniGene 1506375 - Hs.552896]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001106210.1 Kcnc1 gene product M. musculus 100.0 584
NP_036988.1 Kcnc1 gene product R. norvegicus 100.0 584
NP_001106212.1 KCNC1 gene product H. sapiens 100.0 584
XP_001172719.2 PREDICTED: potassium voltage-gated channel subfamily C member 1 isoform 2 P. troglodytes 99.8 598
XP_004016168.1 PREDICTED: potassium voltage-gated channel subfamily C member 1 O. aries 99.8 584
NP_001075651.1 KCNC1 gene product O. cuniculus 99.8 510
XP_001087915.1 PREDICTED: potassium voltage-gated channel subfamily C member 1-like isoform 3 M. mulatta 99.7 584
XP_003910211.1 PREDICTED: LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily C member 1 P. anubis 99.7 584
XP_001918269.1 PREDICTED: potassium voltage-gated channel subfamily C member 1 E. caballus 99.7 583
NP_001122197.1 kcnc1a gene product D. rerio 87.6 604
NP_001079081.1 potassium voltage-gated channel, Shaw-related subfamily, member 1 X. laevis 83.5 547
NP_476721.1 shaker cognate w, isoform A D. melanogaster 56.2 459
NP_509795.1 Protein EGL-36 C. elegans 52.0 431
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
NP_001106752.1 potassium voltage-gated channel subfamily C member 1 isoform A B. taurus 99.5 584
NP_001003113.1 KCNC1 gene product C. lupus familiaris 99.3 584

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: infant [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; mixed; testis; kidney; uncharacterized tissue; pharynx; pancreas; embryonic tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p15
UniSTS entry: Chr 11 D11S2313E
UniSTS entry: Chr 11 RH15955
UniSTS entry: Chr 1 RH27338
UniSTS entry: Chr 11 UniSTS:531455
UniSTS entry: Chr 11 KCNC1_V172
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK125480.1 Homo sapiens cDNA FLJ43491 fis, clone OCBBF3008230 A
AK124243.1 Homo sapiens cDNA FLJ42249 fis, clone TKIDN2007667 A
AK123157.1 Homo sapiens cDNA FLJ41162 fis, clone BRACE2039600, highly similar to VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.1 PA
NM_004976.4 Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 1 (KCNC1), transcript variant B, mRNA PA
BC107129.2 Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 1, mRNA (cDNA clone MGC:129855 IMAGE:40024733), complete cds P
NM_001112741.1 Homo sapiens potassium voltage-gated channel, Shaw-related subfamily, member 1 (KCNC1), transcript variant A, mRNA PA
M96747.1 Human KCNC1 gene, partial cds P
L00621.1 Human potassium voltage-gated channel (KCNC1) mRNA P
S56770.1 KCNC1=voltage-gated potassium channel [human, mRNA, 1604 nt] P

EST sequences (10 of 69) [Show all sequences]

R23546.1 Clone IMAGE:34570 brain 5' read
BX099379.1 Clone IMAGp998F20158_;_IMAGE:34570 brain A
BX090988.1 Clone IMAGp998B19313_;_IMAGE:172722 brain PA
AI201688.1 Clone IMAGE:1859326 brain 3' read P
AI379948.1 Clone IMAGE:2068341 mixed 3' read A
R52869.1 Clone IMAGE:41666 brain 5' read
AI632178.1 Clone IMAGE:2238097 uncharacterized tissue 3' read P
R44297.1 Clone IMAGE:34570 brain 3' read A
AI652226.1 Clone IMAGE:2306227 uncharacterized tissue 3' read P
R55575.1 Clone IMAGE:40485 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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