> SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) (SSU72)
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UGID:1439269     UniGene Hs.549751     Homo sapiens (human)   SSU72 Order cDNA clone, Links
SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) (SSU72)

Human protein-coding gene SSU72. Represented by 463 ESTs from 234 cDNA libraries. Corresponds to reference sequence NM_014188.2. [UniGene 1439269 - Hs.549751]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001020828.1 Ssu72 gene product R. norvegicus 100.0 193
XP_001362860.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like M. domestica 100.0 193
XP_001094964.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like M. mulatta 100.0 193
XP_003891022.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 P. anubis 100.0 193
XP_001147261.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform 2 P. troglodytes 100.0 193
NP_054907.1 SSU72 gene product H. sapiens 100.0 193
NP_001069817.1 SSU72 gene product B. taurus 100.0 193
NP_081175.2 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 M. musculus 99.5 193
NP_001084864.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 X. laevis 94.3 193
NP_957022.1 ssu72 gene product D. rerio 92.8 193
NP_608342.1 Ssu72 ortholog, isoform A D. melanogaster 68.6 190
NP_495386.3 Protein SSUP-72 C. elegans 61.9 193
NP_177523.1 Ssu72-like protein A. thaliana 57.8 191
XP_001694879.1 hypothetical protein CHLREDRAFT_130182 C. reinhardtii 52.8 198
NP_014177.1 Ssu72p S. cerevisiae 51.0 192
XP_964973.1 protein SSU72 N. crassa 46.8 173
Other hits (2 of 51) [Show all]SpeciesId(%)Len(aa)
NP_001007876.1 SSU72 gene product G. gallus 99.5 193
NP_001239254.1 SSU72 gene product C. lupus familiaris 99.5 193

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; intestine; tonsil; bone marrow; blood; muscle; spleen; pituitary gland; pancreas; connective tissue; uterus; epididymis; mixed; mammary gland; ovary; prostate; thymus; skin; lymph node; kidney; mouth; lymph; eye; placenta; embryonic tissue; testis; uncharacterized tissue; liver; heart; stomach; thyroid; cervix; ascites; salivary gland; bone; vascular; bladder; ganglia; nerve; adrenal gland; pineal gland; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p36.33
UniSTS entry: Fc.estTEB11
UniSTS entry: Chr 2 WI-17614 [Map Viewer]
UniSTS entry: Chr 1 SHGC-74090 [Map Viewer]
UniSTS entry: Chr 1 SHGC-74075 [Map Viewer]
UniSTS entry: Chr 1 A001Y42 [Map Viewer]
UniSTS entry: Chr 1 A009A39
UniSTS entry: Chr 1 GDB:314949
UniSTS entry: Chr 1 GDB:434012
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AK127149.1 Homo sapiens cDNA FLJ45206 fis, clone BRCAN2010581 P
AK001809.1 Homo sapiens cDNA FLJ10947 fis, clone PLACE1000066, weakly similar to SSU72 PROTEIN P
NM_014188.2 Homo sapiens SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) (SSU72), mRNA PA
AK023110.1 Homo sapiens cDNA FLJ13048 fis, clone NT2RP3001399, weakly similar to SSU72 PROTEIN P
AF277178.1 Homo sapiens PNAS-120 mRNA, complete cds P
BC008070.2 Homo sapiens SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae), mRNA (cDNA clone MGC:2805 IMAGE:2961422), complete cds PA
AJ276409.1 Homo sapiens mRNA for hypothetical protein, clone STRAIT14513 P
AK310067.1 Homo sapiens cDNA, FLJ17109 P
AK297505.1 Homo sapiens cDNA FLJ60055 complete cds, highly similar to Rattus norvegicus Ssu72 RNA polymerase II CTD phosphatase homolog, mRNA P
BC018909.2 Homo sapiens SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4054323) PA
AF161530.1 Homo sapiens HSPC182 mRNA, complete cds PA
AB593172.1 Homo sapiens HP08716 mRNA, partial sequence, clone: HP08716-RBd88H07

EST sequences (10 of 463) [Show all sequences]

AA976709.1 Clone IMAGE:1585537 lung 3' read
AA977299.1 Clone IMAGE:1589978 kidney 3' read A
AA993536.1 Clone IMAGE:1623234 embryonic tissue 3' read P
AA904437.1 Clone IMAGE:1507155 mixed 3' read A
AI005081.1 Clone IMAGE:1625722 mixed 3' read P
AI051392.1 Clone IMAGE:1658840 embryonic tissue 3' read
AI082224.1 Clone IMAGE:1662564 mixed 3' read P
AA902103.1 Clone IMAGE:1521610 lung 3' read P
CB054519.1 Clone IMAGE:3291463 brain 5' read
AI168033.1 Clone IMAGE:1682832 parathyroid 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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