> Tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13)
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UGID:138154     UniGene Hs.54673     Homo sapiens (human)   TNFSF13 Order cDNA clone, Links
Tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13)

Human protein-coding gene TNFSF13. Represented by 421 ESTs from 188 cDNA libraries. Corresponds to 10 reference sequences (different isoforms). [UniGene 138154 - Hs.54673]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_742086.1 TNFSF12-TNFSF13 gene product H. sapiens 100.0 329
NP_001192059.1 tumor necrosis factor ligand superfamily member 13 P. troglodytes 100.0 249
NP_035744.1 Tnfsf12 gene product M. musculus 93.6 248
Other hits (2 of 11) [Show all]SpeciesId(%)Len(aa)
XP_001109101.1 PREDICTED: tumor necrosis factor ligand superfamily member 13-like isoform 2 M. mulatta 98.8 329
XP_003912310.1 PREDICTED: tumor necrosis factor ligand superfamily member 13 P. anubis 98.8 329

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; mixed; intestine; kidney; tonsil; bone; adrenal gland; mouth; bladder; testis; pharynx; skin; parathyroid; eye; ovary; prostate; pancreas; uncharacterized tissue; blood; trachea; thymus; spleen; uterus; thyroid; placenta; lymph node; muscle; embryonic tissue; connective tissue; mammary gland; liver; cervix; stomach; heart; vascular; ascites; salivary gland; adipose tissue; nerve; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17p13.1
UniSTS entry: Chr 17 SHGC-56910
UniSTS entry: Chr 17 RH16009
UniSTS entry: Chr 17 RH98958
UniSTS entry: Chr 1 D1S3688
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (34)

AF055872.1 Homo sapiens Apo3/DR3 ligand (APO3L) mRNA, complete cds PA
AF046888.1 Homo sapiens proliferation inducing ligand APRIL mRNA, complete cds P
AY377858.1 Homo sapiens APRIL mRNA, partial cds P
AY358880.1 Homo sapiens clone DNA52722 APRIL (UNQ383) mRNA, complete cds P
AY358870.1 Homo sapiens clone DNA30879 Apo-3 Ligand (UNQ181) mRNA, complete cds PA
NM_003809.2 Homo sapiens tumor necrosis factor (ligand) superfamily, member 12 (TNFSF12), transcript variant 1, mRNA PA
NM_003808.3 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), transcript variant alpha, mRNA PA
AF114011.1 Homo sapiens tumor necrosis factor-related death ligand-1alpha mRNA, complete cds P
AF114012.1 Homo sapiens tumor necrosis factor-related death ligand-1beta mRNA, complete cds PA
AF114013.1 Homo sapiens tumor necrosis factor-related death ligand-1gamma mRNA, complete cds PA
CR542073.1 Homo sapiens full open reading frame cDNA clone RZPDo834E0836D for gene TNFSF13, tumor necrosis factor (ligand) superfamily, member 13; complete cds, without stopcodon P
CR542040.1 Homo sapiens full open reading frame cDNA clone RZPDo834C0236D for gene TNFSF13, tumor necrosis factor (ligand) superfamily, member 13; complete cds, incl. stopcodon P
BT019562.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 mRNA, complete cds P
BT019561.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 mRNA, complete cds P
AF136294.1 Homo sapiens TNF and ApoL related ligand TALL-2 (TALL2) mRNA, complete cds P
AF184972.1 Homo sapiens tumor necrosis factor-like protein ZTNF2 (ZTNF2) mRNA, complete cds P
BC104420.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 12, mRNA (cDNA clone MGC:129581 IMAGE:40004935), complete cds P
DQ149579.1 Homo sapiens tumor necrosis factor (ligand) superfamily member 13 transcript variant delta (TNFSF13) mRNA, complete cds, alternatively spliced P
AK225556.1 Homo sapiens mRNA for tumor necrosis factor ligand superfamily, member 13 isoform alpha proprotein variant, clone: KDN03305 PA
BC008042.2 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13, mRNA (cDNA clone MGC:15176 IMAGE:3837834), complete cds PA
EF211088.1 Homo sapiens tumor necrosis factor ligand superfamily member 13 epsilon (TNFSF13) mRNA, complete cds, alternatively spliced P
AK314518.1 Homo sapiens cDNA, FLJ95337 P
AK090698.1 Homo sapiens cDNA FLJ33379 fis, clone BRACE2006397, highly similar to Tumor necrosis factor ligand superfamily member 13 precursor P
AK301221.1 Homo sapiens cDNA FLJ57090 complete cds, highly similar to Tumor necrosis factor ligand superfamily member 13 precursor P
NM_001198624.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), transcript variant eta, mRNA P
NM_001198623.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), transcript variant zeta, mRNA P
NM_001198622.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), transcript variant delta, mRNA P
NR_037146.1 Homo sapiens tumor necrosis factor (ligand) superfamily, member 12 (TNFSF12), transcript variant 2, non-coding RNA PA
NR_073490.2 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), transcript variant episilon, non-coding RNA A
AY081050.1 Homo sapiens APRIL (TNFSF13) mRNA, complete cds P
NM_172089.3 Homo sapiens TNFSF12-TNFSF13 readthrough (TNFSF12-TNFSF13), mRNA PA
NM_172088.2 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), transcript variant gamma, mRNA PA
NM_172087.2 Homo sapiens tumor necrosis factor (ligand) superfamily, member 13 (TNFSF13), transcript variant beta, mRNA PA
AF030099.1 Homo sapiens TWEAK mRNA, complete cds P

EST sequences (10 of 421) [Show all sequences]

AA962254.1 Clone IMAGE:1602139 lung 3' read
AA906164.1 Clone IMAGE:1506320 mixed 3' read
AA975451.1 Clone IMAGE:1558165 lung 3' read
AA887008.1 Clone IMAGE:1499867 lung 3' read
AA902616.1 Clone IMAGE:1502729 kidney 3' read
AA907505.1 Clone IMAGE:1521821 lung 3' read
AI002550.1 Clone IMAGE:1593636 kidney 3' read A
AI081661.1 Clone IMAGE:1632506 mammary gland 3' read A
AI127694.1 Clone IMAGE:1710752 uterus 3' read
CB046924.1 Clone IMAGE:3253016 kidney 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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