> RAB43, member RAS oncogene family (RAB43)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:1414835     UniGene Hs.546542     Homo sapiens (human)   RAB43 Order cDNA clone, Links
RAB43, member RAS oncogene family (RAB43)

Human protein-coding gene RAB43. Represented by 55 ESTs from 34 cDNA libraries. Corresponds to 7 reference sequences (different isoforms). [UniGene 1414835 - Hs.546542]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003906942.1 PREDICTED: ras-related protein Rab-43 isoform 1 P. anubis 100.0 211
XP_003310046.1 PREDICTED: ras-related protein Rab-43-like isoform 4 P. troglodytes 100.0 211
NP_001191812.1 RAB43 gene product H. sapiens 100.0 211
XP_001094209.2 PREDICTED: ras-related protein Rab-43-like M. mulatta 100.0 203
XP_001488993.1 PREDICTED: ras-related protein Rab-43-like E. caballus 99.5 211
NP_001034483.1 Rab43 gene product M. musculus 95.2 208
NP_001089457.1 uncharacterized protein LOC734507 X. laevis 86.8 203
NP_001038812.1 zgc:153788 gene product D. rerio 79.4 203
NP_502576.1 Protein RAB-19 C. elegans 68.9 206
NP_523970.1 Rab19, isoform A D. melanogaster 67.7 192
NP_187779.1 Ras-related protein RABD1 A. thaliana 54.3 199
XP_001703135.1 small rab-related GTPase C. reinhardtii 53.8 199
NP_116615.1 Ypt1p S. cerevisiae 53.6 168
XP_963146.2 GTP-binding protein ypt1 N. crassa 53.2 186
Other hits (2 of 63) [Show all]SpeciesId(%)Len(aa)
XP_003639768.1 PREDICTED: ras-related protein Rab-43-like C. lupus familiaris 98.6 211
XP_001378446.2 PREDICTED: ras-related protein Rab-43-like M. domestica 96.7 208

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; placenta; adipose tissue; testis; uncharacterized tissue; thymus; liver; intestine; trachea; mammary gland; muscle; uterus; lung; eye; connective tissue; blood; stomach; skin; pancreas
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q21.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AY166852.2 Homo sapiens RAB43 mRNA, complete cds P
AK128345.1 Homo sapiens cDNA FLJ46487 fis, clone THYMU3026783 P
BC062319.1 Homo sapiens RAB43, member RAS oncogene family, mRNA (cDNA clone MGC:71421 IMAGE:4873224), complete cds PA
NM_198490.2 Homo sapiens RAB43, member RAS oncogene family (RAB43), transcript variant 1, mRNA PA
AK291014.1 Homo sapiens cDNA FLJ76173 complete cds, highly similar to Homo sapiens RAB43, member RAS oncogene family (RAB43), mRNA P
D45418.1 Homo sapiens Rab11B mRNA P
NM_001204888.1 Homo sapiens RAB43, member RAS oncogene family (RAB43), transcript variant 7, mRNA PA
NM_001204887.1 Homo sapiens RAB43, member RAS oncogene family (RAB43), transcript variant 6, mRNA PA
NM_001204886.1 Homo sapiens RAB43, member RAS oncogene family (RAB43), transcript variant 5, mRNA PA
NM_001204885.1 Homo sapiens RAB43, member RAS oncogene family (RAB43), transcript variant 4, mRNA PA
NM_001204884.1 Homo sapiens RAB43, member RAS oncogene family (RAB43), transcript variant 3, mRNA PA
NM_001204883.1 Homo sapiens RAB43, member RAS oncogene family (RAB43), transcript variant 2, mRNA PA

EST sequences (10 of 55) [Show all sequences]

CB991795.1 Clone IMAGE:30336308 placenta 5' read
CB992213.1 Clone IMAGE:30340247 placenta 5' read
CB995331.1 Clone IMAGE:30333462 placenta 5' read
CB995563.1 Clone IMAGE:30337329 placenta 5' read
BX331971.2 Clone CS0DC005YF10 uncharacterized tissue 5' read P
BX471509.1 Clone DKFZp686M07127 muscle 5' read P
AW452812.1 Clone IMAGE:3069159 uncharacterized tissue 3' read A
AW818199.1 stomach
CN293338.1 embryonic tissue 5' read
CN349145.1 embryonic tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help