> Ribosomal protein S27a (RPS27A)
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UGID:1414585     UniGene Hs.546292     Homo sapiens (human)   RPS27A Order cDNA clone, Links
Ribosomal protein S27a (RPS27A)

Human protein-coding gene RPS27A. Represented by 655 ESTs from 261 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 1414585 - Hs.546292]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_077239.1 Rps27a gene product M. musculus 100.0 155
NP_112375.1 Rps27a gene product R. norvegicus 100.0 155
XP_001375230.1 PREDICTED: ubiquitin-40S ribosomal protein S27a-like M. domestica 100.0 155
XP_002199635.1 PREDICTED: ubiquitin-40S ribosomal protein S27a T. guttata 100.0 155
NP_001086065.1 ribosomal protein S27a X. laevis 100.0 155
NP_001016172.1 rps27a gene product X. tropicalis 100.0 155
NP_990284.1 RPS27A gene product G. gallus 100.0 155
XP_001112274.1 PREDICTED: hypothetical protein LOC718909 M. mulatta 100.0 155
XP_003908711.1 PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 P. anubis 100.0 155
NP_001239528.1 RPS27A gene product P. troglodytes 100.0 155
NP_001129064.1 RPS27A gene product H. sapiens 100.0 155
NP_001239157.1 RPS27A gene product C. lupus familiaris 100.0 155
XP_001496841.1 PREDICTED: ubiquitin-40S ribosomal protein S27a-like E. caballus 100.0 155
XP_003125184.1 PREDICTED: ubiquitin-40S ribosomal protein S27a-like S. scrofa 100.0 155
NP_777203.1 RPS27A gene product B. taurus 100.0 155
XP_004005993.1 PREDICTED: ubiquitin-40S ribosomal protein S27a O. aries 100.0 155
XP_002724420.1 PREDICTED: ubiquitin and ribosomal protein S27a-like O. cuniculus 100.0 155
NP_956796.1 rps27a gene product D. rerio 99.4 155
NP_476778.1 ribosomal protein S27A D. melanogaster 98.1 155
XP_955944.2 ubiquitin-40S ribosomal protein S31 fusion protein N. crassa 93.5 153
NP_566095.1 ubiquitin-40S ribosomal protein S27a-2 A. thaliana 93.0 156
NP_013268.1 ubiquitin-ribosomal 40S subunit protein S31 fusion protein S. cerevisiae 92.7 151
NP_741102.1 Protein UBL-1, isoform a C. elegans 64.2 151
XP_001696195.1 ribosomal protein S27a, component of cytosolic 80S ribosome and 40S small subunit C. reinhardtii 55.5 146
Other hits (2 of 52) [Show all]SpeciesId(%)Len(aa)
XP_003216177.1 PREDICTED: ubiquitin-40S ribosomal protein S27a-like A. carolinensis 99.4 155
XP_003963790.1 PREDICTED: ubiquitin-40S ribosomal protein S27a-like T. rubripes 99.4 155

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; prostate; liver; embryonic tissue; mixed; esophagus; thymus; uncharacterized tissue; connective tissue; bone marrow; blood; pituitary gland; eye; ear; mouth; pineal gland; placenta; skin; spleen; lymph; pharynx; pancreas; uterus; testis; adipose tissue; umbilical cord; intestine; ovary; lung; kidney; adrenal gland; heart; salivary gland; ascites; stomach; vascular; thyroid; tonsil; mammary gland; muscle; lymph node; bladder; cervix; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2p16
UniSTS entry: Chr 17 PMC280674P2
UniSTS entry: Chr 17 D2S2663
UniSTS entry: Chr 2 RP_S27A_1 [Map Viewer]
UniSTS entry: Chr X DXS1154
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

M10939.1 Human ubiquitin mRNA, 3' end P
NM_002954.5 Homo sapiens ribosomal protein S27a (RPS27A), transcript variant 1, mRNA P
AY952889.1 Homo sapiens antigen MMSA-8 mRNA sequence P
BC042362.1 Homo sapiens ribosomal protein S27a, mRNA (cDNA clone MGC:57125 IMAGE:4831143), complete cds PA
AK225718.1 Homo sapiens mRNA for bA92K2.2 variant, clone: TMS08221 PA
NM_001135592.2 Homo sapiens ribosomal protein S27a (RPS27A), transcript variant 2, mRNA P
S79522.1 ubiquitin carboxyl extension protein [human, mRNA, 540 nt] P
NM_001177413.1 Homo sapiens ribosomal protein S27a (RPS27A), transcript variant 3, mRNA P
X63237.1 H.sapiens Uba80 mRNA for ubiquitin P

EST sequences (10 of 655) [Show all sequences]

AA908295.1 Clone IMAGE:1441679 mammary gland 3' read A
R16731.1 Clone IMAGE:128748 mixed 3' read P
AI002831.1 Clone IMAGE:1684178 brain 3' read P
CB068966.1 Clone IMAGE:6554287 pancreas 5' read P
CB143763.1 Clone L16HLK3-17-G11 liver 5' read P
CB159463.1 Clone L18POOL1n1-39-A03 liver 5' read P
CB107028.1 Clone L3SNU475-12-C01 liver 5' read P
CB121846.1 Clone L3SNU475s1-12-E07 liver 5' read P
CB117313.1 Clone L4SNU368-30-B02 liver 5' read P
CB117787.1 Clone L4SNU368-33-A03 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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