> Rho guanine nucleotide exchange factor (GEF) 39 (ARHGEF39)
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UGID:1370893     UniGene Hs.534579     Homo sapiens (human)   ARHGEF39 Order cDNA clone, Links
Rho guanine nucleotide exchange factor (GEF) 39 (ARHGEF39)

Human protein-coding gene ARHGEF39. Represented by 149 ESTs from 79 cDNA libraries. Corresponds to reference sequence NM_032818.2. [UniGene 1370893 - Hs.534579]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003312117.1 PREDICTED: vav-like protein C9orf100 homolog P. troglodytes 100.0 334
NP_116207.2 ARHGEF39 gene product H. sapiens 100.0 334
NP_001013395.2 rho guanine nucleotide exchange factor 39 M. musculus 89.5 335
NP_001007342.1 arhgef39 gene product D. rerio 51.8 340
NP_001082576.1 putative Rho family guanine-nucleotide exchange factor X. laevis 45.8 177
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001088590.1 PREDICTED: chromosome 9 open reading frame 100 ortholog M. mulatta 99.1 334
XP_003911592.1 PREDICTED: LOW QUALITY PROTEIN: vav-like protein C9orf100 homolog P. anubis 98.4 371

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; placenta; kidney; lymph node; skin; brain; embryonic tissue; lung; intestine; eye; muscle; adipose tissue; testis; larynx; mouth; esophagus; thymus; liver; ovary; prostate; stomach; heart; uterus; mixed; pancreas; cervix; thyroid; blood; ascites; mammary gland; pituitary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9p13.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK001187.1 Homo sapiens cDNA FLJ10325 fis, clone NT2RM2000569 P
AK225529.1 Homo sapiens mRNA for hypothetical protein LOC84904 isoform 1 variant, clone: KAT09589 PA
AK225501.1 Homo sapiens mRNA for hypothetical protein LOC84904 isoform 1 variant, clone: KAT01103 PA
NM_032818.2 Homo sapiens Rho guanine nucleotide exchange factor (GEF) 39 (ARHGEF39), mRNA P
BC033666.1 Homo sapiens chromosome 9 open reading frame 100, mRNA (cDNA clone MGC:44886 IMAGE:5000577), complete cds PA
AK303513.1 Homo sapiens cDNA FLJ57465 complete cds P

EST sequences (10 of 149) [Show all sequences]

AA987397.1 Clone IMAGE:1593287 kidney 3' read
AI300939.1 Clone IMAGE:1908876 lung 3' read
AI309889.1 Clone IMAGE:2057632 mammary gland 3' read
AI422631.1 Clone IMAGE:2110651 prostate 3' read
AI478358.1 Clone IMAGE:2161051 kidney 3' read
R43866.1 Clone IMAGE:33495 brain 3' read
F34322.1 Clone s3000066G10 muscle
AI721204.1 Clone IMAGE:2333836 intestine 3' read
AI741777.1 Clone IMAGE:2365892 mixed 3' read A
AI792283.1 Clone IMAGE:1155871 kidney 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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