> UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A)
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UGID:1293230     UniGene Hs.533855     Homo sapiens (human)   UPF3A Order cDNA clone, Links
UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A)

Human protein-coding gene UPF3A. Represented by 309 ESTs from 158 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1293230 - Hs.533855]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_075387.1 UPF3A gene product H. sapiens 100.0 475
NP_080200.1 UPF3 regulator of nonsense transcripts homolog A M. musculus 84.0 420
NP_001189377.1 upf3a gene product D. rerio 68.8 474
Other hits (2 of 31) [Show all]SpeciesId(%)Len(aa)
XP_002800895.1 PREDICTED: regulator of nonsense transcripts 3A-like isoform 2 M. mulatta 97.8 354
XP_003914153.1 PREDICTED: regulator of nonsense transcripts 3A isoform 1 P. anubis 97.4 462

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; prostate; embryonic tissue; lung; skin; heart; mixed; intestine; pancreas; eye; liver; uterus; trachea; connective tissue; mouth; placenta; uncharacterized tissue; pituitary gland; parathyroid; ascites; bone; nerve; blood; lymph node; amniotic fluid; kidney; mammary gland; muscle; larynx; spleen; thyroid; stomach; cervix
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 13
Map position: 13q34
UniSTS entry: Chr 17 RH17923
UniSTS entry: Chr 17 G27732
UniSTS entry: Chr 17 SHGC-64094
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BC023569.1 Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone MGC:20683 IMAGE:4127465), complete cds PA
AK001069.1 Homo sapiens cDNA FLJ10207 fis, clone HEMBA1005475 P
NM_023011.3 Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 1, mRNA PA
AF318575.1 Homo sapiens UPF3 (UPF3) mRNA, complete cds PA
AY013250.1 Homo sapiens hUPF3A mRNA, complete cds P
NM_080687.2 Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast) (UPF3A), transcript variant 2, mRNA PA
AK302003.1 Homo sapiens cDNA FLJ61452 complete cds, moderately similar to Regulator of nonsense transcripts 3A P
BC008694.1 Homo sapiens UPF3 regulator of nonsense transcripts homolog A (yeast), mRNA (cDNA clone IMAGE:3866772), complete cds PA

EST sequences (10 of 309) [Show all sequences]

AI023658.1 Clone IMAGE:1651907 mixed 3' read A
AI027615.1 Clone IMAGE:1645435 testis 3' read A
AI028569.1 Clone IMAGE:1645587 testis 3' read A
AI033263.1 Clone IMAGE:1654891 mixed 3' read
AI081872.1 Clone IMAGE:1638257 testis 3' read A
R24051.1 Clone IMAGE:131523 placenta 3' read A
CB051487.1 Clone IMAGE:3289595 prostate 3' read P
AI083970.1 Clone IMAGE:1679043 skin 3' read A
AI086729.1 Clone IMAGE:1680944 skin 3' read A
BX095843.1 Clone IMAGp998O234635_;_IMAGE:1891822 placenta


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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