> TNF receptor-associated factor 1 (TRAF1)
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UGID:1231041     UniGene Hs.531251     Homo sapiens (human)   TRAF1 Order cDNA clone, Links
TNF receptor-associated factor 1 (TRAF1)

Human protein-coding gene TRAF1. Represented by 140 ESTs from 79 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 1231041 - Hs.531251]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001177874.1 TRAF1 gene product H. sapiens 100.0 415
XP_001158357.1 PREDICTED: TNF receptor-associated factor 1 isoform 3 P. troglodytes 99.5 415
NP_033447.2 Traf1 gene product M. musculus 92.9 408
NP_001121853.1 TNF receptor-associated factor 1 D. rerio 59.9 348
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_001095862.1 PREDICTED: TNF receptor-associated factor 1 isoform 1 M. mulatta 99.0 415
XP_003911344.1 PREDICTED: TNF receptor-associated factor 1 P. anubis 99.0 415

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; lung; brain; kidney; mammary gland; connective tissue; embryonic tissue; blood; mixed; skin; intestine; lymph node; larynx; stomach; mouth; testis; umbilical cord; uterus; lymph; eye; ascites; pineal gland; ovary; tonsil
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q33-q34
UniSTS entry: Chr 9 RH79125
UniSTS entry: Chr 9 RH17818
UniSTS entry: Chr 9 SHGC-30554 [Map Viewer]
UniSTS entry: Chr 9 SGC35347 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

NM_005658.4 Homo sapiens TNF receptor-associated factor 1 (TRAF1), transcript variant 1, mRNA P
BT019408.1 Homo sapiens TNF receptor-associated factor 1 mRNA, complete cds P
U19261.1 Homo sapiens Epstein-Barr virus-induced protein mRNA, complete cds PA
AK315476.1 Homo sapiens cDNA, FLJ96537, Homo sapiens TNF receptor-associated factor 1 (TRAF1), mRNA P
BC024145.2 Homo sapiens TNF receptor-associated factor 1, mRNA (cDNA clone MGC:10353 IMAGE:3832475), complete cds PA
AK090468.1 Homo sapiens mRNA for FLJ00389 protein P
AL832989.1 Homo sapiens mRNA; cDNA DKFZp666E213 (from clone DKFZp666E213) PA
AK295959.1 Homo sapiens cDNA FLJ53047 complete cds, highly similar to TNF receptor-associated factor 1 P
NM_001190947.1 Homo sapiens TNF receptor-associated factor 1 (TRAF1), transcript variant 3, mRNA P
NM_001190945.1 Homo sapiens TNF receptor-associated factor 1 (TRAF1), transcript variant 2, mRNA P

EST sequences (10 of 140) [Show all sequences]

AA977631.1 Clone IMAGE:1555836 kidney 3' read
AA922208.1 Clone IMAGE:1544082 mixed 3' read
AI123519.1 Clone IMAGE:1690110 mixed 3' read
CB054857.1 Clone IMAGE:3291773 brain 3' read A
CB054858.1 Clone IMAGE:3291773 brain 5' read
BX115910.1 Clone IMAGp998H16245_;_IMAGE:155583 mammary gland A
AI241927.1 Clone IMAGE:1977667 brain 3' read A
AI269033.1 Clone IMAGE:1865093 kidney 3' read
AI276156.1 Clone IMAGE:1878168 mixed 3' read
AI288399.1 Clone IMAGE:1988375 uterus 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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