> Actin filament associated protein 1 (AFAP1)
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UGID:1203636     UniGene Hs.529369     Homo sapiens (human)   AFAP1 Order cDNA clone, Links
Actin filament associated protein 1 (AFAP1)

Human protein-coding gene AFAP1. Represented by 260 ESTs from 140 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 1203636 - Hs.529369]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001128119.1 AFAP1 gene product H. sapiens 100.0 813
XP_003310294.1 PREDICTED: actin filament-associated protein 1 isoform 1 P. troglodytes 99.9 813
NP_081649.1 Afap1 gene product M. musculus 94.1 730
XP_696774.3 PREDICTED: actin filament-associated protein 1-like D. rerio 79.6 802
NP_001079952.1 actin filament-associated protein 1-like 2 X. laevis 56.9 160
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003898485.1 PREDICTED: actin filament-associated protein 1-like, partial P. anubis 99.3 690
XP_002804046.1 PREDICTED: actin filament-associated protein 1-like M. mulatta 98.3 412

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; pancreas; mammary gland; amniotic fluid; skin; eye; mixed; pituitary gland; esophagus; kidney; prostate; embryonic tissue; uncharacterized tissue; stomach; bone marrow; vascular; placenta; uterus; lung; muscle; connective tissue; intestine; spleen; thymus; liver; larynx; bone; ovary; mouth; thyroid; trachea; bladder; cervix; ear; ascites
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4p16
UniSTS entry: Chr 4 SHGC-67969 [Map Viewer]
UniSTS entry: Chr 4 SHGC-67377
UniSTS entry: Chr 4 A005T26
UniSTS entry: Chr 4 G20482
UniSTS entry: SHGC-67374
UniSTS entry: Chr 4 SHGC-58846
UniSTS entry: Chr 1 11776et
UniSTS entry: Chr 4 SHGC-67801
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AK127962.1 Homo sapiens cDNA FLJ46074 fis, clone TESTI2001915, highly similar to Homo sapiens actin filament associated protein (AFAP) P
NM_198595.2 Homo sapiens actin filament associated protein 1 (AFAP1), transcript variant 2, mRNA PA
AB209676.1 Homo sapiens mRNA for actin filament associated protein variant protein P
AF188700.1 Homo sapiens actin filament associated protein (AFAP) mRNA, complete cds PA
BC015900.1 Homo sapiens, clone IMAGE:3909917, mRNA A
AK290807.1 Homo sapiens cDNA FLJ75286 complete cds, highly similar to Homo sapiens actin filament associated protein (AFAP), transcript variant 1, mRNA P
BC032777.1 Homo sapiens actin filament associated protein 1, mRNA (cDNA clone MGC:44840 IMAGE:4914388), complete cds PA
AK297631.1 Homo sapiens cDNA FLJ56849 complete cds, moderately similar to Mus musculus actin filament associated protein 1 (Afap1), mRNA P
NM_001134647.1 Homo sapiens actin filament associated protein 1 (AFAP1), transcript variant A, mRNA PA
D25248.1 Homo sapiens mRNA, clone: RES4-4

Model sequences (1)

XR_112616.1 PREDICTED: Homo sapiens uncharacterized LOC389199 (LOC389199), misc_RNA

EST sequences (10 of 260) [Show all sequences]

AI004445.1 Clone IMAGE:1619961 testis 3' read A
AI149094.1 Clone IMAGE:1721025 uterus 3' read A
BX090344.1 Clone IMAGp998K24334_;_IMAGE:181007 brain
AI188460.1 Clone IMAGE:1723685 placenta 3' read A
AA897378.1 Clone IMAGE:1466164 mixed 3' read A
AI085991.1 Clone IMAGE:1679615 skin 3' read
AI291099.1 Clone IMAGE:1881422 lung 3' read A
AI308758.1 Clone IMAGE:1913566 intestine 3' read
CB217097.1 Clone IMAGE:5938611 uterus 5' read
AI457577.1 Clone IMAGE:2144899 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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