> Synapse defective 1, Rho GTPase, homolog 1 (C. elegans) (SYDE1)
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UGID:1202968     UniGene Hs.528701     Homo sapiens (human)   SYDE1 Order cDNA clone, Links
Synapse defective 1, Rho GTPase, homolog 1 (C. elegans) (SYDE1)

Human protein-coding gene SYDE1. Represented by 199 ESTs from 112 cDNA libraries. Corresponds to reference sequence NM_033025.4. [UniGene 1202968 - Hs.528701]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_149014.3 SYDE1 gene product H. sapiens 100.0 734
XP_003316210.1 PREDICTED: rho GTPase-activating protein SYDE1 isoform 1 P. troglodytes 99.7 734
NP_082151.1 rho GTPase-activating protein SYDE1 M. musculus 90.6 736
XP_696571.5 PREDICTED: rho GTPase-activating protein SYDE2-like D. rerio 59.3 652
NP_001163785.1 RhoGAP100F, isoform B D. melanogaster 49.7 163
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_003915117.1 PREDICTED: rho GTPase-activating protein SYDE1 isoform 1 P. anubis 98.5 732
XP_001112731.2 PREDICTED: rho GTPase-activating protein SYDE1-like M. mulatta 96.8 554

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; brain; mixed; kidney; uterus; thyroid; heart; skin; lung; bone; connective tissue; muscle; testis; embryonic tissue; pancreas; intestine; mouth; spleen; thymus; liver; cervix; eye; uncharacterized tissue; prostate; salivary gland; epididymis; ovary; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.12
UniSTS entry: Chr 19 SGC33062 [Map Viewer]
UniSTS entry: Chr 19 WI-11575 [Map Viewer]
UniSTS entry: Chr 19 RH12226
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AK128870.1 Homo sapiens cDNA FLJ46850 fis, clone UTERU3006720 P
AK123686.1 Homo sapiens cDNA FLJ41692 fis, clone HCHON2000028, highly similar to Homo sapiens 7h3 protein mRNA P
AK023573.1 Homo sapiens cDNA FLJ13511 fis, clone PLACE1005331, highly similar to Homo sapiens 7h3 protein mRNA P
NM_033025.4 Homo sapiens synapse defective 1, Rho GTPase, homolog 1 (C. elegans) (SYDE1), mRNA P
BC018942.2 Homo sapiens synapse defective 1, Rho GTPase, homolog 1 (C. elegans), mRNA (cDNA clone IMAGE:4139438), partial cds PA
AK315453.1 Homo sapiens cDNA, FLJ96511 P
BC029926.1 Homo sapiens synapse defective 1, Rho GTPase, homolog 1 (C. elegans), mRNA (cDNA clone MGC:34690 IMAGE:5106728), complete cds PA

EST sequences (10 of 199) [Show all sequences]

AI004015.1 Clone IMAGE:1625938 mixed 3' read A
AI031701.1 Clone IMAGE:1668747 brain 3' read A
AI038901.1 Clone IMAGE:1664188 skin 3' read A
AI076283.1 Clone IMAGE:1672815 mixed 3' read PA
AI081398.1 Clone IMAGE:1679979 skin 3' read A
R22090.1 Clone IMAGE:130762 placenta 5' read
BX108359.1 Clone IMAGp998K21197_;_IMAGE:137228 placenta
AI189343.1 Clone IMAGE:1722842 placenta 3' read A
AI192799.1 Clone IMAGE:1744092 lung 3' read A
AI277869.1 Clone IMAGE:1892158 placenta 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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