> Nucleoporin 98kDa (NUP98)
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UGID:915497     UniGene Hs.524750     Homo sapiens (human)   NUP98 Order cDNA clone, Links
Nucleoporin 98kDa (NUP98)

Human protein-coding gene NUP98. Represented by 489 ESTs from 228 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 915497 - Hs.524750]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_057404.2 NUP98 gene product H. sapiens 100.0 1799
XP_001158098.1 PREDICTED: nuclear pore complex protein Nup98-Nup96 isoform 2 P. troglodytes 100.0 936
NP_075355.1 Nup98 gene product M. musculus 96.6 1186
NP_956979.2 nucleoporin 98 D. rerio 70.5 1813
NP_001247266.1 nucleoporin 98-96, isoform C D. melanogaster 56.2 235
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_001109293.1 PREDICTED: nuclear pore complex protein Nup98-Nup96-like M. mulatta 99.2 1470
XP_003910419.1 PREDICTED: nuclear pore complex protein Nup98-Nup96 P. anubis 99.2 1720

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; mixed; lung; embryonic tissue; uterus; uncharacterized tissue; skin; eye; blood; connective tissue; thymus; pancreas; heart; bone; prostate; lymph node; intestine; stomach; cervix; trachea; placenta; mammary gland; adrenal gland; vascular; ovary; kidney; muscle; pharynx; ascites; liver; spleen; larynx; mouth; lymph; adipose tissue; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11p15.5
UniSTS entry: Chr 11 G29170
UniSTS entry: Chr 11 G30118
UniSTS entry: Chr 11 RH81020
UniSTS entry: Chr 11 SHGC-106541
UniSTS entry: Chr 11 RH18062
UniSTS entry: Chr 1 L17688
UniSTS entry: Chr 11 D11S3624
UniSTS entry: Chr 11 RH48599
UniSTS entry: Chr 11 G59577
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

BT007349.1 Homo sapiens nucleoporin 98kDa mRNA, complete cds P
NM_005387.5 Homo sapiens nucleoporin 98kDa (NUP98), transcript variant 3, mRNA PA
AL133601.1 Homo sapiens mRNA; cDNA DKFZp434A2315 (from clone DKFZp434A2315) PA
AL137613.1 Homo sapiens mRNA; cDNA DKFZp434M0511 (from clone DKFZp434M0511) PA
NM_016320.4 Homo sapiens nucleoporin 98kDa (NUP98), transcript variant 1, mRNA PA
AF071076.1 Homo sapiens cell-line HeLa Nup98-Nup96 precursor, mRNA, complete cds PA
AF071077.1 Homo sapiens cell-line HeLa Nup98-Nup96 precursor splice variant 1 mRNA, complete cds PA
AF116074.1 Homo sapiens ADIR2 (ADIR2) mRNA, complete cds PA
AB040538.1 Homo sapiens NUP98 mRNA for nucleoporin, complete cds PA
U41815.1 Human nucleoporin 98 (NUP98) mRNA, complete cds PA
BC012906.1 Homo sapiens nucleoporin 98kDa, mRNA (cDNA clone IMAGE:3881182), partial cds PA
AF231130.1 Homo sapiens NUP196 nucleoporin mRNA, complete cds PA
AK292882.1 Homo sapiens cDNA FLJ77211 complete cds, highly similar to Homo sapiens nucleoporin 98kDa (NUP98), transcript variant 3, mRNA P
NM_139132.3 Homo sapiens nucleoporin 98kDa (NUP98), transcript variant 4, mRNA PA
NM_139131.3 Homo sapiens nucleoporin 98kDa (NUP98), transcript variant 2, mRNA PA
AK301512.1 Homo sapiens cDNA FLJ53414 complete cds, highly similar to Nuclear pore complex protein Nup98-Nup96precursor P
BC041136.1 Homo sapiens nucleoporin 98kDa, mRNA (cDNA clone MGC:47603 IMAGE:5179730), complete cds PA

EST sequences (10 of 489) [Show all sequences]

AA910465.1 Clone IMAGE:1505634 mixed 3' read A
AA977220.1 Clone IMAGE:1587423 uncharacterized tissue 3' read A
AA992318.1 Clone IMAGE:1620518 testis 3' read A
AA911168.1 Clone IMAGE:1520332 kidney 3' read A
AI023619.1 Clone IMAGE:1643627 testis 3' read
AI028259.1 Clone IMAGE:1645552 testis 3' read A
AI026682.1 Clone IMAGE:1645639 testis 3' read A
AI034380.1 Clone IMAGE:1656934 mixed 3' read P
AI052679.1 Clone IMAGE:1676432 embryonic tissue 3' read A
AI080658.1 Clone IMAGE:1677302 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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