> CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 (CTDSP2)
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UGID:915277     UniGene Hs.524530     Homo sapiens (human)   CTDSP2 Order cDNA clone, Links
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 (CTDSP2)

Human protein-coding gene CTDSP2. Represented by 997 ESTs from 394 cDNA libraries. Corresponds to reference sequence NM_005730.3. [UniGene 915277 - Hs.524530]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001116527.1 PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform 2 M. mulatta 100.0 270
XP_003906738.1 PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 P. anubis 100.0 270
XP_001167131.1 PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 P. troglodytes 100.0 270
NP_005721.3 CTDSP2 gene product H. sapiens 100.0 270
NP_001231476.1 CTDSP2 gene product S. scrofa 99.6 270
NP_001039400.1 CTDSP2 gene product B. taurus 99.6 270
NP_001106941.1 Ctdsp2 gene product M. musculus 96.7 269
NP_955838.1 ctdsp2 gene product D. rerio 88.2 254
NP_001079929.1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 X. laevis 88.2 270
NP_001122411.1 Protein SCPL-1, isoform c C. elegans 75.1 205
NP_648825.1 CG5830, isoform A D. melanogaster 73.7 270
XP_001728188.1 hypothetical protein NCU08380 N. crassa 64.4 180
XP_001695470.1 predicted protein C. reinhardtii 63.2 174
NP_013119.1 Psr2p S. cerevisiae 57.4 204
NP_001078572.1 SCP1-like small phosphatase 5 A. thaliana 48.9 176
Other hits (2 of 57) [Show all]SpeciesId(%)Len(aa)
XP_538256.2 PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform 1 C. lupus familiaris 99.3 270
XP_004006561.1 PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like O. aries 99.3 270

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; uterus; embryonic tissue; intestine; uncharacterized tissue; muscle; mammary gland; skin; placenta; testis; lymph node; eye; mixed; bone marrow; pancreas; prostate; trachea; ovary; heart; adrenal gland; kidney; thyroid; spleen; thymus; blood; bone; liver; connective tissue; lymph; mouth; pituitary gland; pharynx; cervix; vascular; esophagus; tonsil; parathyroid; ascites; stomach; salivary gland; nerve; ganglia; bladder; umbilical cord; amniotic fluid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q14.1
UniSTS entry: Chr 12 RH67816
UniSTS entry: Chr 12 RH45075 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AF022231.1 Homo sapiens unknown protein mRNA, complete cds P
AY279531.1 Homo sapiens small CTD phosphatase 2 mRNA, complete cds P
NM_005730.3 Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 (CTDSP2), mRNA PA
BC065920.1 Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, mRNA (cDNA clone MGC:70608 IMAGE:5756196), complete cds PA
AK226076.1 Homo sapiens mRNA for nuclear LIM interactor-interacting factor 2 variant, clone: sj06327 P
AK291289.1 Homo sapiens cDNA FLJ77134 complete cds, highly similar to Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, mRNA P
AK311070.1 Homo sapiens cDNA, FLJ18112 P
AK310873.1 Homo sapiens cDNA, FLJ17915 P
AK310183.1 Homo sapiens cDNA, FLJ17225
AK312413.1 Homo sapiens cDNA, FLJ92750 P
AK294930.1 Homo sapiens cDNA FLJ58982 complete cds, highly similar to Carboxy-terminal domain RNA polymerase IIpolypeptide A small phosphatase 2 (EC 3.1.3.16) P
BC018922.2 Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, mRNA (cDNA clone IMAGE:4110249) PA
U09409.1 Human clone OS-4 chromosome 12q13 mRNA sequence
U81556.1 Human hypothetical protein A4 mRNA, complete cds
AF000152.1 Homo sapiens OS-4 protein (OS-4) mRNA, complete cds PA

EST sequences (10 of 997) [Show all sequences]

AA960980.1 Clone IMAGE:1564193 mixed 3' read
AA910485.1 Clone IMAGE:1516825 uncharacterized tissue 3' read A
AA973563.1 Clone IMAGE:1569251 lung 3' read
AA991622.1 Clone IMAGE:1609787 mammary gland 3' read A
R17454.1 Clone IMAGE:32428 brain 5' read
AI002681.1 Clone IMAGE:1699180 kidney 3' read A
AI004864.1 Clone IMAGE:1621050 testis 3' read A
AI040299.1 Clone IMAGE:1665316 skin 3' read A
AI042538.1 Clone IMAGE:1665064 skin 3' read A
AI056551.1 Clone IMAGE:1673875 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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