> ClpB caseinolytic peptidase B homolog (E. coli) (CLPB)
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UGID:914624     UniGene Hs.523877     Homo sapiens (human)   CLPB Order cDNA clone, Links
ClpB caseinolytic peptidase B homolog (E. coli) (CLPB)

Human protein-coding gene CLPB. Represented by 443 ESTs from 125 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 914624 - Hs.523877]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_110440.1 CLPB gene product H. sapiens 100.0 706
XP_001174710.1 PREDICTED: caseinolytic peptidase B protein homolog isoform 3 P. troglodytes 99.9 706
NP_033217.1 Clpb gene product M. musculus 95.9 676
XP_002664799.1 PREDICTED: caseinolytic peptidase B protein homolog, partial D. rerio 85.4 405
NP_001190035.1 Clp ATPase A. thaliana 51.0 194
NP_010544.3 chaperone ATPase HSP78 S. cerevisiae 49.7 171
XP_957228.1 heat shock protein 101 N. crassa 48.0 177
XP_001698806.1 ClpB chaperone, Hsp100 family C. reinhardtii 46.4 179
Other hits (2 of 55) [Show all]SpeciesId(%)Len(aa)
XP_001114862.1 PREDICTED: caseinolytic peptidase B protein homolog isoform 2 M. mulatta 99.3 706
XP_003910417.1 PREDICTED: caseinolytic peptidase B protein homolog isoform 2 P. anubis 99.3 706

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; uncharacterized tissue; blood; mammary gland; stomach; ovary; embryonic tissue; kidney; mixed; placenta; prostate; lymph; adrenal gland; skin; lung; uterus; muscle; thymus; esophagus; trachea; eye; intestine; spleen; mouth; thyroid; vascular; pancreas; liver; ascites; connective tissue; lymph node; heart; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q13.4
UniSTS entry: Chr 11 A008U48 [Map Viewer]
UniSTS entry: Chr 11 MARC_6997-6998:996689895:1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AK023214.1 Homo sapiens cDNA FLJ13152 fis, clone NT2RP3003385, highly similar to Mus musculus SKD3 mRNA P
AL136909.1 Homo sapiens mRNA; cDNA DKFZp434O209 (from clone DKFZp434O209) PA
BC006404.2 Homo sapiens ClpB caseinolytic peptidase B homolog (E. coli), mRNA (cDNA clone MGC:13160 IMAGE:4304523), complete cds PA
NM_030813.4 Homo sapiens ClpB caseinolytic peptidase B homolog (E. coli) (CLPB), transcript variant 1, mRNA P
AL834484.1 Homo sapiens mRNA; cDNA DKFZp434P1321 (from clone DKFZp434P1321) PA
AK302158.1 Homo sapiens cDNA FLJ53238 complete cds, highly similar to Caseinolytic peptidase B protein PA
AK302069.1 Homo sapiens cDNA FLJ53237 complete cds, highly similar to Caseinolytic peptidase B protein PA
AK302006.1 Homo sapiens cDNA FLJ53235 complete cds, highly similar to Caseinolytic peptidase B protein PA
BC006257.2 Homo sapiens ClpB caseinolytic peptidase B homolog (E. coli), mRNA (cDNA clone IMAGE:3946730), complete cds PA
NM_001258394.1 Homo sapiens ClpB caseinolytic peptidase B homolog (E. coli) (CLPB), transcript variant 4, mRNA P
NM_001258392.1 Homo sapiens ClpB caseinolytic peptidase B homolog (E. coli) (CLPB), transcript variant 2, mRNA P
NM_001258393.1 Homo sapiens ClpB caseinolytic peptidase B homolog (E. coli) (CLPB), transcript variant 3, mRNA P

EST sequences (10 of 443) [Show all sequences]

R16227.1 Clone IMAGE:53289 brain 3' read P
R16228.1 Clone IMAGE:53289 brain 5' read P
AA994975.1 Clone IMAGE:1634996 kidney 3' read P
AI024395.1 Clone IMAGE:1640930 testis 3' read PA
AI125546.1 Clone IMAGE:1737124 testis 3' read P
BX114454.1 Clone IMAGp998N2117_;_IMAGE:53289 brain PA
AI220551.1 Clone IMAGE:1838519 testis 3' read PA
CB157863.1 Clone L18POOL1n1-5-B07 liver 5' read P
CB163116.1 Clone L18POOL1n1-46-F07 liver 5' read P
AI244551.1 Clone IMAGE:1868973 kidney 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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