Structure specific recognition protein 1 (SSRP1)

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UGID:914427 UniGene Hs.523680 Homo sapiens (human) SSRP1

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Structure specific recognition protein 1 (SSRP1)

Human protein-coding gene SSRP1. Represented by 699 ESTs from 268 cDNA libraries. Corresponds to reference sequence NM_003146.2. [UniGene 914427 - Hs.523680]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_001103334.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: FACT complex subunit SSRP1	M. mulatta	100.0	708
XP_003909913.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: FACT complex subunit SSRP1	P. anubis	100.0	708
NP_003137.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SSRP1 gene product	H. sapiens	100.0	708
XP_859953.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: FACT complex subunit SSRP1 isoform 4	C. lupus familiaris	99.9	710
XP_003954279.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1	P. troglodytes	99.9	708
XP_003353912.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: FACT complex subunit SSRP1	S. scrofa	99.9	708
NP_001094511.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SSRP1 gene product	B. taurus	99.9	708
NP_892035.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Ssrp1 gene product	M. musculus	99.2	707
NP_001084164.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	FACT complex subunit SSRP1	X. laevis	89.6	692
XP_001923156.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: FACT complex subunit SSRP1	D. rerio	87.0	712
NP_523830.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	structure specific recognition protein	D. melanogaster	60.4	715
NP_498633.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Protein HMG-4	C. elegans	51.5	386
Other hits (2 of 33) [Show all]		Species	Id(%)	Len(aa)
NP_112383.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Ssrp1 gene product	R. norvegicus	99.3	708
XP_004023562.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1	O. aries	99.0	702

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	embryonic tissue; brain; testis; lung; eye; uncharacterized tissue; intestine; placenta; pancreas; uterus; skin; blood; mammary gland; larynx; bladder; ascites; lymph; mixed; bone; ovary; prostate; liver; cervix; kidney; stomach; muscle; lymph node; esophagus; amniotic fluid; epididymis; mouth; tonsil; connective tissue; heart; adrenal gland; vascular; salivary gland; umbilical cord; parathyroid; adipose tissue

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	11
Map position:	11q12
UniSTS entry:	Chr 11	GDB:197864
UniSTS entry:	Chr 11	WI-9146	[Map Viewer]
UniSTS entry:	Chr 11	SHGC-30227	[Map Viewer]
UniSTS entry:	Chr 11	SSRP1
UniSTS entry:	Chr 11	RH17745

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_003146.2	Homo sapiens structure specific recognition protein 1 (SSRP1), mRNA	PA
BC091486.1	Homo sapiens structure specific recognition protein 1, mRNA (cDNA clone IMAGE:6526385), partial cds	PA
M86737.1	Human high mobility group box (SSRP1) mRNA, complete cds	PA
BC005116.1	Homo sapiens structure specific recognition protein 1, mRNA (cDNA clone MGC:1608 IMAGE:3536048), complete cds	PA

EST sequences (10 of 699) [Show all sequences]

AA864428.1	Clone IMAGE:1459940	kidney	3' read	P
AA983384.1	Clone IMAGE:1592753	kidney	3' read	A
AA993395.1	Clone IMAGE:1621209	testis	3' read	PA
AI024913.1	Clone IMAGE:1639276	testis	3' read	A
AI034453.1	Clone IMAGE:1647754	parathyroid	3' read
AI091401.1	Clone IMAGE:1567352	mixed	3' read	P
AI125376.1	Clone IMAGE:1736583	testis	3' read	A
CB047191.1	Clone IMAGE:3253226	kidney	3' read	A
CB047192.1	Clone IMAGE:3253226	kidney	5' read	A
BX091842.1	Clone IMAGp998C13274_;_IMAGE:46606	brain		A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria