> Ribosomal protein L13a (RPL13A)
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UGID:913932     UniGene Hs.523185     Homo sapiens (human)   RPL13A Order cDNA clone, Links
Ribosomal protein L13a (RPL13A)

Human protein-coding gene RPL13A. Represented by 6285 ESTs from 735 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 913932 - Hs.523185]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003952917.1 PREDICTED: 60S ribosomal protein L13a-like P. troglodytes 100.0 207
NP_001182348.1 ribosomal protein L13a M. mulatta 100.0 202
XP_003915944.1 PREDICTED: 60S ribosomal protein L13a isoform 1 P. anubis 100.0 202
NP_036555.1 RPL13A gene product H. sapiens 100.0 202
XP_003432774.1 PREDICTED: 60S ribosomal protein L13a C. lupus familiaris 100.0 202
XP_001491926.1 PREDICTED: 60S ribosomal protein L13a-like E. caballus 100.0 202
NP_001230998.1 RPL13A gene product S. scrofa 100.0 202
NP_001070466.1 RPL13A gene product B. taurus 100.0 202
XP_002723961.1 PREDICTED: ribosomal protein L13a-like O. cuniculus 100.0 116
NP_775462.2 Rpl13a gene product R. norvegicus 99.5 202
NP_033464.2 Rpl13a gene product M. musculus 99.0 202
NP_001080130.1 ribosomal protein L13a X. laevis 97.7 214
NP_997949.1 rpl13a gene product D. rerio 95.6 203
NP_193053.1 60S ribosomal protein L13a-3 A. thaliana 72.7 204
XP_001692909.1 ribosomal protein L13a, component of cytosolic 80S ribosome and 60S large subunit C. reinhardtii 72.7 183
NP_649560.1 ribosomal protein L13A, isoform B D. melanogaster 71.1 203
XP_961587.1 60S ribosomal protein L16 N. crassa 70.2 200
NP_012133.1 ribosomal 60S subunit protein L16A S. cerevisiae 68.3 198
NP_497721.1 Protein RPL-16 C. elegans 62.0 200
Other hits (2 of 52) [Show all]SpeciesId(%)Len(aa)
XP_001363221.1 PREDICTED: 60S ribosomal protein L13a-like M. domestica 99.0 202
XP_003226237.1 PREDICTED: 60S ribosomal protein L13a-like A. carolinensis 98.5 202

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; pancreas; lung; embryonic tissue; liver; intestine; prostate; eye; skin; mixed; placenta; uterus; uncharacterized tissue; lymph; stomach; ovary; mammary gland; muscle; kidney; cervix; bone; testis; lymph node; bone marrow; tonsil; ascites; connective tissue; heart; blood; umbilical cord; thyroid; salivary gland; pharynx; vascular; spleen; adrenal gland; adipose tissue; pituitary gland; bladder; mouth; parathyroid; thymus; ear; nerve; esophagus; larynx; pineal gland; spinal cord; epididymis; trachea; amniotic fluid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19q13.3
UniSTS entry: Chr 11 RH27395
UniSTS entry: Chr 19 RH38886
UniSTS entry: Chr 19 D19S1021 [Map Viewer]
UniSTS entry: RPL13A
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (21)

AK130605.1 Homo sapiens cDNA FLJ27095 fis, clone SPL04438, highly similar to 60S ribosomal protein L13A P
BC062537.1 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:71249 IMAGE:4908022), complete cds PA
NM_012423.3 Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 1, mRNA PA
BC065236.1 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:70840 IMAGE:6161599), complete cds PA
BC070223.1 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:88204 IMAGE:6736442), complete cds PA
BC071929.1 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:88614 IMAGE:5808487), complete cds PA
AK222747.1 Homo sapiens mRNA for ribosomal protein L13a variant, clone: DMC05308 P
BC001836.2 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:4241 IMAGE:2961667), complete cds PA
BC001675.2 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:2546 IMAGE:2961667), complete cds PA
BC000514.2 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:8547 IMAGE:2822802), complete cds PA
BC105605.1 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone MGC:111166 IMAGE:6726477), complete cds PA
BC004900.2 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone IMAGE:3545758), partial cds PA
AK291120.1 Homo sapiens cDNA FLJ75551 complete cds, highly similar to Homo sapiens ribosomal protein L13a (RPL13A), mRNA PA
X56932.1 H.sapiens mRNA for 23 kD highly basic protein P
AK297859.1 Homo sapiens cDNA FLJ51256 complete cds, highly similar to 60S ribosomal protein L13a PA
BC032107.2 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone IMAGE:4644246) PA
BC013230.1 Homo sapiens ribosomal protein L13a, mRNA (cDNA clone IMAGE:3462928) PA
BC000847.1 Homo sapiens cDNA clone IMAGE:3458102 A
AB082924.1 Homo sapiens RPL13a mRNA for ribosomal protein L13a, complete cds PA
NM_001270491.1 Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 2, mRNA PA
NR_073024.1 Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 3, non-coding RNA PA

EST sequences (10 of 6285) [Show all sequences]

AA953635.1 Clone IMAGE:1591204 kidney 3' read P
AA954815.1 Clone IMAGE:1574324 kidney 3' read A
AA863394.1 Clone IMAGE:1469301 uncharacterized tissue 3' read PA
AA865036.1 Clone IMAGE:1459484 kidney 3' read
AA864942.1 Clone IMAGE:1459852 kidney 3' read
AA908292.1 Clone IMAGE:1441669 mammary gland 3' read PA
AA961430.1 Clone IMAGE:1599551 uncharacterized tissue 3' read A
AA961696.1 Clone IMAGE:1598306 uncharacterized tissue 3' read A
AA961703.1 Clone IMAGE:1598327 uncharacterized tissue 3' read
AA962076.1 Clone IMAGE:1599514 uncharacterized tissue 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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