> Brevican (BCAN)
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UGID:907651     UniGene Hs.516904     Homo sapiens (human)   BCAN Order cDNA clone, Links
Brevican (BCAN)

Human protein-coding gene BCAN. Represented by 507 ESTs from 101 cDNA libraries. EST representation biased toward glioma. Corresponds to 2 reference sequences (different isoforms). [UniGene 907651 - Hs.516904]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_068767.3 BCAN gene product H. sapiens 100.0 910
XP_001166305.1 PREDICTED: brevican core protein isoform 7 P. troglodytes 99.7 906
NP_031555.2 Bcan gene product M. musculus 90.2 882
NP_001082106.1 brevican precursor X. laevis 67.2 1148
XP_003201085.1 PREDICTED: neurocan core protein D. rerio 52.9 263
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001116679.1 PREDICTED: brevican core protein-like isoform 3 M. mulatta 98.5 909
XP_003892883.1 PREDICTED: brevican core protein P. anubis 98.5 909

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: glioma [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; uncharacterized tissue; ear; mixed; kidney; intestine; cervix; adrenal gland; skin; embryonic tissue; placenta; testis; stomach; pineal gland; uterus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q31
UniSTS entry: Chr 1 WI-15716 [Map Viewer]
UniSTS entry: Chr 1 RH63843 [Map Viewer]
UniSTS entry: Chr 1 D1S3694
UniSTS entry: Chr 1 WI-15733 [Map Viewer]
UniSTS entry: MARC_7395-7396:996687863:1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

AY358372.1 Homo sapiens clone DNA98565 Brevican Core Pro (UNQ2525) mRNA, complete cds P
NM_198427.1 Homo sapiens brevican (BCAN), transcript variant 2, mRNA PA
AL137504.1 Homo sapiens mRNA; cDNA DKFZp761L191 (from clone DKFZp761L191); partial cds PA
AB209570.1 Homo sapiens mRNA for brevican isoform 1 variant protein P
AF228710.1 Homo sapiens chondroitin sulfate proteoglycan BEHAB/brevican mRNA, soluble isoform, complete cds P
AF229053.1 Homo sapiens chondroitin sulfate proteoglycan BEHAB/brevican mRNA, GPI isoform, complete cds P
NM_021948.4 Homo sapiens brevican (BCAN), transcript variant 1, mRNA PA
BC009117.1 Homo sapiens brevican, mRNA (cDNA clone MGC:18150 IMAGE:4154474), complete cds PA
AK289759.1 Homo sapiens cDNA FLJ76746 complete cds, highly similar to Homo sapiens brevican (BCAN), transcript variant 1, mRNA P
BC022938.1 Homo sapiens brevican, mRNA (cDNA clone MGC:24965 IMAGE:4932894), complete cds PA
BC027971.1 Homo sapiens brevican, mRNA (cDNA clone MGC:34716 IMAGE:5309663), complete cds PA
BC035457.1 Homo sapiens brevican, mRNA (cDNA clone IMAGE:4156034) PA
BC029348.1 Homo sapiens cDNA clone IMAGE:4180213, containing frame-shift errors PA
BC029313.1 Homo sapiens brevican, mRNA (cDNA clone IMAGE:4157828) PA
BC023209.1 Homo sapiens brevican, mRNA (cDNA clone IMAGE:4940883) PA
BC013234.1 Homo sapiens brevican, mRNA (cDNA clone IMAGE:4154690) PA
AY007241.1 Homo sapiens hyaluronan binding protein (HABP2) mRNA, partial cds P

EST sequences (10 of 507) [Show all sequences]

R20427.1 Clone IMAGE:32687 brain 5' read
R21312.1 Clone IMAGE:35809 brain 5' read P
T06430.1 Clone HFBDT34 brain P
BX112804.1 Clone IMAGp998K16154_;_IMAGE:32687 brain A
AI205172.1 Clone IMAGE:1955220 brain 3' read P
AI205180.1 Clone IMAGE:1955229 brain 3' read P
AI207912.1 Clone IMAGE:1955304 brain 3' read P
AI214132.1 Clone IMAGE:1956886 brain 3' read P
AI266554.1 Clone IMAGE:1899823 kidney 3' read
T06928.1 Clone HFBEB04 brain P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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