> Chondroitin polymerizing factor (CHPF)
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UGID:907458     UniGene Hs.516711     Homo sapiens (human)   CHPF Order cDNA clone, Links
Chondroitin polymerizing factor (CHPF)

Human protein-coding gene CHPF. Represented by 491 ESTs from 204 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 907458 - Hs.516711]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_078812.2 CHPF gene product H. sapiens 100.0 774
NP_001162489.1 chondroitin sulfate synthase 2 P. anubis 99.8 612
XP_001104808.1 PREDICTED: chondroitin sulfate synthase 2 isoform 3 M. mulatta 99.7 774
XP_003309517.1 PREDICTED: chondroitin sulfate synthase 2 isoform 1 P. troglodytes 99.6 774
NP_001001566.1 Chpf gene product M. musculus 96.1 773
XP_002663375.2 PREDICTED: chondroitin sulfate synthase 2 isoform 1 D. rerio 58.9 767
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_003359697.1 PREDICTED: LOW QUALITY PROTEIN: chondroitin sulfate synthase 2-like S. scrofa 97.9 774
NP_001192680.1 chondroitin sulfate synthase 2 B. taurus 97.9 774

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; skin; ovary; bladder; trachea; testis; placenta; mixed; adipose tissue; spleen; muscle; prostate; uncharacterized tissue; eye; lung; larynx; thymus; kidney; mammary gland; intestine; uterus; esophagus; embryonic tissue; stomach; connective tissue; liver; pancreas; heart; lymph; bone; cervix; mouth; lymph node; thyroid; amniotic fluid; pituitary gland; blood; salivary gland; ganglia; pharynx; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q35
UniSTS entry: Chr 2 RH48039
UniSTS entry: Chr 2 REN53276
UniSTS entry: Chr 2 REN53275
UniSTS entry: Chr 2 REN53277
UniSTS entry: Chr 2 REN53273
UniSTS entry: Chr 2 REN53285
UniSTS entry: Chr 2 REN53274
UniSTS entry: Chr 2 REN53278
UniSTS entry: Chr 2 REN53293
UniSTS entry: Chr 2 ECD00370
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

AB095813.1 Homo sapiens ChPF mRNA for chondroitin polymerizing factor, complete cds PA
AB086063.1 Homo sapiens CSS3 mRNA for chondroitin sulfate synthase, complete cds PA
AY358403.1 Homo sapiens clone DNA59820 RASL651 (UNQ651) mRNA, complete cds P
AK026331.1 Homo sapiens cDNA: FLJ22678 fis, clone HSI10665 PA
AL136814.1 Homo sapiens mRNA; cDNA DKFZp434E0423 (from clone DKFZp434E0423) PA
NM_024536.5 Homo sapiens chondroitin polymerizing factor (CHPF), transcript variant 1, mRNA PA
BC008878.2 Homo sapiens chondroitin polymerizing factor, mRNA (cDNA clone IMAGE:4298587), partial cds PA
BC021223.2 Homo sapiens chondroitin polymerizing factor, mRNA (cDNA clone MGC:13135 IMAGE:4128192), complete cds PA
AK302124.1 Homo sapiens cDNA FLJ53626 complete cds, highly similar to Chondroitin sulfate synthase 2 (EC 2.4.1.175) P
BC023531.2 Homo sapiens chondroitin polymerizing factor, mRNA (cDNA clone MGC:14188 IMAGE:4123041), complete cds PA
NM_001195731.1 Homo sapiens chondroitin polymerizing factor (CHPF), transcript variant 2, mRNA P

EST sequences (10 of 491) [Show all sequences]

AA954585.1 Clone IMAGE:1563101 mixed 3' read A
AA961925.1 Clone IMAGE:1580122 mixed 3' read
AA984525.1 Clone IMAGE:1630178 brain 3' read P
AA991431.1 Clone IMAGE:1612709 uncharacterized tissue 3' read A
R17779.1 Clone IMAGE:31102 brain 5' read P
R17794.1 Clone IMAGE:31117 brain 5' read P
AI015358.1 Clone IMAGE:1637329 uncharacterized tissue 3' read A
AI031867.1 Clone IMAGE:1668836 brain 3' read A
R19763.1 Clone IMAGE:34847 brain 5' read P
AI074872.1 Clone IMAGE:1667051 skin 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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