> Splicing factor 3b, subunit 4, 49kDa (SF3B4)
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UGID:906907     UniGene Hs.516160     Homo sapiens (human)   SF3B4 Order cDNA clone, Links
Splicing factor 3b, subunit 4, 49kDa (SF3B4)

Human protein-coding gene SF3B4. Represented by 593 ESTs from 234 cDNA libraries. Corresponds to reference sequence NM_005850.4. [UniGene 906907 - Hs.516160]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_694693.1 splicing factor 3B subunit 4 M. musculus 100.0 423
NP_001011951.1 Sf3b4 gene product R. norvegicus 100.0 423
XP_001097793.1 PREDICTED: splicing factor 3B subunit 4 isoform 3 M. mulatta 100.0 423
XP_003892612.1 PREDICTED: splicing factor 3B subunit 4 P. anubis 100.0 423
XP_513768.2 PREDICTED: splicing factor 3B subunit 4 isoform 4 P. troglodytes 100.0 423
NP_005841.1 SF3B4 gene product H. sapiens 100.0 423
XP_001926524.1 PREDICTED: splicing factor 3B subunit 4 S. scrofa 100.0 423
NP_001192513.1 SF3B4 gene product B. taurus 100.0 423
XP_004002485.1 PREDICTED: splicing factor 3B subunit 4 O. aries 100.0 423
XP_001365466.1 PREDICTED: splicing factor 3B subunit 4-like M. domestica 99.8 423
XP_540295.3 PREDICTED: splicing factor 3B subunit 4 C. lupus familiaris 99.8 423
XP_001488649.2 PREDICTED: splicing factor 3B subunit 4-like E. caballus 99.6 449
NP_705947.3 sf3b4 gene product D. rerio 93.5 399
NP_001086794.1 MGC82420 protein X. laevis 93.2 382
NP_511058.1 spliceosomal protein on the X D. melanogaster 84.4 346
NP_001021932.1 Protein SAP-49 C. elegans 76.8 387
NP_179441.1 splicing factor 3B subunit 4 A. thaliana 72.9 357
XP_001696380.1 nuclear pre-mRNA splicing factor, component of splicing factor 3b C. reinhardtii 71.6 393
XP_961142.1 hypothetical protein NCU04182 N. crassa 56.8 380
Other hits (2 of 46) [Show all]SpeciesId(%)Len(aa)
XP_002715414.1 PREDICTED: splicing factor 3b, subunit 4 O. cuniculus 99.2 383
XP_001516274.2 PREDICTED: splicing factor 3B subunit 4-like O. anatinus 98.4 250

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; skin; lung; embryonic tissue; uterus; eye; placenta; pancreas; blood; prostate; intestine; stomach; mixed; testis; liver; ovary; mammary gland; lymph; cervix; kidney; lymph node; bone marrow; muscle; thyroid; bone; tonsil; connective tissue; thymus; vascular; bladder; spleen; heart; pharynx; ascites
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q21.2
UniSTS entry: Chr 1 PMC193924P1
UniSTS entry: Chr 1 RH69043
UniSTS entry: MARC_7383-7384:996687846:1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

NM_005850.4 Homo sapiens splicing factor 3b, subunit 4, 49kDa (SF3B4), mRNA PA
BC090883.1 Homo sapiens splicing factor 3b, subunit 4, 49kDa, mRNA (cDNA clone MGC:102968 IMAGE:30386953), complete cds PA
AK223322.1 Homo sapiens mRNA for splicing factor 3b, subunit 4 variant, clone: TMS07207 PA
BC004273.1 Homo sapiens splicing factor 3b, subunit 4, 49kDa, mRNA (cDNA clone MGC:10828 IMAGE:3615080), complete cds PA
BC013886.2 Homo sapiens splicing factor 3b, subunit 4, 49kDa, mRNA (cDNA clone MGC:11086 IMAGE:3829990), complete cds PA
AK310495.1 Homo sapiens cDNA, FLJ17537 P
AK097315.1 Homo sapiens cDNA FLJ39996 fis, clone STOMA2002166, highly similar to Splicing factor 3B subunit 4 P

EST sequences (10 of 593) [Show all sequences]

AA970763.1 Clone IMAGE:1576476 intestine 3' read A
AI026697.1 Clone IMAGE:1644138 testis 3' read A
BX100483.1 Clone IMAGp998M20167_;_IMAGE:38675 brain A
CB142585.1 Clone L16HLK3-25-D10 liver 5' read P
CB160044.1 Clone L18POOL1n1-47-A08 liver 5' read P
CB117198.1 Clone L4SNU368-29-D05 liver 5' read P
CB111726.1 Clone L5HLK1-21-A05 liver 5' read P
CB115808.1 Clone L8SCK0-7-E11 liver 5' read P
CB120183.1 Clone L8SCK0-29-A04 liver 5' read
CB154904.1 Clone B2N807043-30-C06 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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