> Calcium binding and coiled-coil domain 2 (CALCOCO2)
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UGID:905667     UniGene Hs.514920     Homo sapiens (human)   CALCOCO2 Order cDNA clone, Links
Calcium binding and coiled-coil domain 2 (CALCOCO2)

Human protein-coding gene CALCOCO2. Represented by 836 ESTs from 316 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 905667 - Hs.514920]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001248319.1 CALCOCO2 gene product H. sapiens 100.0 469
NP_001233315.1 CALCOCO2 gene product P. troglodytes 99.5 445
XP_003086911.1 PREDICTED: calcium-binding and coiled-coil domain-containing protein 2-like, partial M. musculus 69.5 199
NP_997829.1 tax1bp1b gene product D. rerio 45.4 194
Other hits (2 of 13) [Show all]SpeciesId(%)Len(aa)
XP_003912738.1 PREDICTED: calcium-binding and coiled-coil domain-containing protein 2 isoform 1 P. anubis 96.9 445
XP_001090780.2 PREDICTED: calcium-binding and coiled-coil domain-containing protein 2 isoform 4 M. mulatta 96.8 466

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; kidney; uncharacterized tissue; uterus; muscle; heart; bladder; eye; umbilical cord; liver; intestine; spleen; lung; adrenal gland; placenta; blood; mixed; mammary gland; thymus; prostate; embryonic tissue; pancreas; parathyroid; stomach; bone marrow; adipose tissue; connective tissue; vascular; ear; mouth; trachea; bone; skin; thyroid; pharynx; salivary gland; cervix; ovary; lymph node; tonsil; esophagus; ascites; lymph; pituitary gland; ganglia; pineal gland; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q21.32
UniSTS entry: Chr 17 STS-U22897 [Map Viewer]
UniSTS entry: Chr 17 WI-11586 [Map Viewer]
UniSTS entry: Chr 17 RH48296
UniSTS entry: Chr 17 SGC32799 [Map Viewer]
UniSTS entry: Chr 17 SGC34389 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (19)

NM_005831.4 Homo sapiens calcium binding and coiled-coil domain 2 (CALCOCO2), transcript variant 3, mRNA P
CR456763.1 Homo sapiens full open reading frame cDNA clone RZPDo834D034D for gene NDP52, nuclear domain 10 protein; complete cds, incl. stopcodon P
U22897.1 Homo sapiens nuclear domain 10 protein (ndp52) mRNA, complete cds P
AK223227.1 Homo sapiens mRNA for nuclear domain 10 protein variant, clone: STM01975 P
AK222666.1 Homo sapiens mRNA for nuclear domain 10 protein variant, clone: CBR02087 PA
BC004130.2 Homo sapiens calcium binding and coiled-coil domain 2, mRNA (cDNA clone MGC:1399 IMAGE:3505988), complete cds PA
BC015893.2 Homo sapiens calcium binding and coiled-coil domain 2, mRNA (cDNA clone MGC:17318 IMAGE:3921397), complete cds PA
AK310648.1 Homo sapiens cDNA, FLJ17690
AK314796.1 Homo sapiens cDNA, FLJ95668, highly similar to Homo sapiens nuclear domain 10 protein (NDP52), mRNA P
AK293137.1 Homo sapiens cDNA FLJ50435 complete cds, highly similar to Homo sapiens nuclear domain 10 protein (NDP52), mRNA P
AK293329.1 Homo sapiens cDNA FLJ51790 complete cds, highly similar to Homo sapiens nuclear domain 10 protein (NDP52), mRNA P
AK298177.1 Homo sapiens cDNA FLJ55141 complete cds, highly similar to Homo sapiens nuclear domain 10 protein (NDP52), mRNA P
AK304024.1 Homo sapiens cDNA FLJ55292 complete cds, highly similar to Homo sapiens nuclear domain 10 protein (NDP52), mRNA P
AK303313.1 Homo sapiens cDNA FLJ52379 complete cds, highly similar to Homo sapiens nuclear domain 10 protein (NDP52), mRNA P
AF085965.1 Homo sapiens full length insert cDNA clone YS16F09 A
NM_001261395.1 Homo sapiens calcium binding and coiled-coil domain 2 (CALCOCO2), transcript variant 5, mRNA P
NM_001261393.1 Homo sapiens calcium binding and coiled-coil domain 2 (CALCOCO2), transcript variant 4, mRNA P
NM_001261391.1 Homo sapiens calcium binding and coiled-coil domain 2 (CALCOCO2), transcript variant 2, mRNA P
NM_001261390.1 Homo sapiens calcium binding and coiled-coil domain 2 (CALCOCO2), transcript variant 1, mRNA P

EST sequences (10 of 836) [Show all sequences]

AI052810.1 Clone IMAGE:1675056 mixed 3' read A
AI066752.1 Clone IMAGE:1638381 testis 3' read P
AI075982.1 Clone IMAGE:1640438 testis 3' read P
AI124943.1 Clone IMAGE:1726494 vascular 3' read A
AI125212.1 Clone IMAGE:1736897 testis 3' read P
AI167369.1 Clone IMAGE:1682766 parathyroid 3' read A
BX111525.1 Clone IMAGp998B201009_;_IMAGE:429619 mixed
AI188175.1 Clone IMAGE:1734433 testis 3' read
AI083777.1 Clone IMAGE:1751234 brain 3' read
AI263067.1 Clone IMAGE:2028342 kidney 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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