> Chemokine (C-C motif) ligand 5 (CCL5)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:905568     UniGene Hs.514821     Homo sapiens (human)   CCL5 Order cDNA clone, Links
Chemokine (C-C motif) ligand 5 (CCL5)

Human protein-coding gene CCL5. Represented by 92 ESTs from 57 cDNA libraries. EST representation biased toward infant. Corresponds to reference sequence NM_002985.2. [UniGene 905568 - Hs.514821]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_002976.2 CCL5 gene product H. sapiens 100.0 90
XP_001155572.3 PREDICTED: c-C motif chemokine 5, partial P. troglodytes 100.0 75
NP_038681.2 Ccl5 gene product M. musculus 80.2 90
Other hits (2 of 7) [Show all]SpeciesId(%)Len(aa)
NP_001028022.1 CCL5 gene product M. mulatta 96.7 90
XP_002719290.1 PREDICTED: chemokine ligand 5-like O. cuniculus 89.0 90

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: infant [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: blood; pharynx; lung; uterus; lymph node; thyroid; mixed; intestine; kidney; prostate; uncharacterized tissue; stomach; liver; mammary gland; adrenal gland; muscle; testis; pancreas; skin; connective tissue; bone; adipose tissue; ovary; brain
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q11.2-q12
UniSTS entry: Ccl5
UniSTS entry: RH103439
UniSTS entry: Chr 1 D1S1425
UniSTS entry: Chr 1 D11S2921
UniSTS entry: Chr 17 G10660
UniSTS entry: Chr 1 D8S2278
UniSTS entry: RH39335
UniSTS entry: Chr 17 PMC126614P7
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

M21121.1 Human T cell-specific protein (RANTES) mRNA, complete cds P
NM_002985.2 Homo sapiens chemokine (C-C motif) ligand 5 (CCL5), mRNA PA
AF266753.1 Homo sapiens beta-chemokine RANTES precursor, mRNA, complete cds P
DQ230537.1 Homo sapiens CCL5/RANTES variant (CCL5) mRNA, complete cds P
BC008600.1 Homo sapiens chemokine (C-C motif) ligand 5, mRNA (cDNA clone MGC:17164 IMAGE:4185200), complete cds PA
AK312212.1 Homo sapiens cDNA, FLJ92501, highly similar to Homo sapiens chemokine (C-C motif) ligand 5 (CCL5), mRNA P
AF043341.1 Homo sapiens RANTES precursor, mRNA, complete cds P

EST sequences (10 of 92) [Show all sequences]

AA946848.1 Clone IMAGE:1589125 kidney 3' read
CB111656.1 Clone L5HLK1-3-B12 liver 5' read
CB126124.1 Clone L5HLK1s1-24-A08 liver 5' read P
AI199413.1 Clone IMAGE:1943968 prostate 3' read A
AI424594.1 Clone IMAGE:2110491 prostate 3' read A
AI471455.1 Clone IMAGE:2044632 lymph node 3' read
AI687343.1 Clone IMAGE:2206215 uterus 3' read A
BX283162.1 Clone IMAGp958B171377_;_IMAGE:4618672 lung P
CD521143.1 Clone IMAGE:30412481 blood 5' read P
CD522059.1 Clone IMAGE:30412094 blood 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help