TRAF-type zinc finger domain containing 1 (TRAFD1)

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UGID:131632 UniGene Hs.5148 Homo sapiens (human) TRAFD1

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TRAF-type zinc finger domain containing 1 (TRAFD1)

Human protein-coding gene TRAFD1. Represented by 568 ESTs from 228 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 131632 - Hs.5148]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_001137378.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	TRAFD1 gene product	H. sapiens	100.0	581
NP_001156942.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Trafd1 gene product	M. musculus	82.8	579
NP_001085457.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	TRAF-type zinc finger domain-containing protein 1	X. laevis	58.2	194
NP_001082984.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	zgc:162228 gene product	D. rerio	50.3	159
Other hits (2 of 19) [Show all]		Species	Id(%)	Len(aa)
XP_509385.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: TRAF-type zinc finger domain-containing protein 1 isoform 2	P. troglodytes	99.5	581
NP_001253436.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	TRAF-type zinc finger domain-containing protein 1	M. mulatta	97.9	581

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; testis; uncharacterized tissue; skin; mouth; pancreas; muscle; bone marrow; spleen; placenta; heart; tonsil; uterus; embryonic tissue; bladder; mixed; lung; connective tissue; prostate; eye; blood; ovary; kidney; thymus; liver; lymph node; intestine; vascular; adipose tissue; mammary gland; pharynx; thyroid; stomach; lymph; epididymis; ascites; salivary gland; cervix; bone; trachea; esophagus; umbilical cord; nerve

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	12
Map position:	12q
UniSTS entry:	Chr 12	A006C17
UniSTS entry:	Chr 12	A002Y44	[Map Viewer]
UniSTS entry:	Chr 12	D12S275E
UniSTS entry:	Chr 12	D12S1234E

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK122620.1	Homo sapiens cDNA FLJ16040 fis, clone BRACE2006319, highly similar to Homo sapiens mRNA for Fln29	P
NM_006700.2	Homo sapiens TRAF-type zinc finger domain containing 1 (TRAFD1), transcript variant 2, mRNA	PA
BC003553.2	Homo sapiens TRAF-type zinc finger domain containing 1, mRNA (cDNA clone MGC:1295 IMAGE:3547039), complete cds	PA
AK291331.1	Homo sapiens cDNA FLJ76844 complete cds, highly similar to Homo sapiens TRAF-type zinc finger domain containing 1 (TRAFD1), mRNA	P
AK309916.1	Homo sapiens cDNA, FLJ99957	P
AK312601.1	Homo sapiens cDNA, FLJ92978	P
AK295474.1	Homo sapiens cDNA FLJ55063 complete cds, highly similar to Homo sapiens TRAF-type zinc finger domain containing 1 (TRAFD1), mRNA	P
NM_001143906.1	Homo sapiens TRAF-type zinc finger domain containing 1 (TRAFD1), transcript variant 1, mRNA	PA
AB007447.1	Homo sapiens mRNA for Fln29, complete cds	P

EST sequences (10 of 568) [Show all sequences]

AA954330.1	Clone IMAGE:1563029	mixed	3' read
AA994345.1	Clone IMAGE:1628228	mixed	3' read	A
AA834161.1	Clone IMAGE:1421097	kidney
AA922457.1	Clone IMAGE:1551842	uncharacterized tissue	3' read	A
R21288.1	Clone IMAGE:35782	brain	5' read	P
AI141744.1	Clone IMAGE:1615393	uncharacterized tissue	3' read	A
CB046744.1	Clone IMAGE:3252957	kidney	3' read
CB046745.1	Clone IMAGE:3252957	kidney	5' read	A
R25534.1	Clone IMAGE:35482	brain	5' read	P
AI205196.1	Clone IMAGE:1952568	brain	3' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria