> Charged multivesicular body protein 6 (CHMP6)
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UGID:905307     UniGene Hs.514560     Homo sapiens (human)   CHMP6 Order cDNA clone, Links
Charged multivesicular body protein 6 (CHMP6)

Human protein-coding gene CHMP6. Represented by 262 ESTs from 130 cDNA libraries. Corresponds to reference sequence NM_024591.4. [UniGene 905307 - Hs.514560]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003913595.1 PREDICTED: charged multivesicular body protein 6 P. anubis 100.0 200
NP_078867.2 CHMP6 gene product H. sapiens 100.0 200
XP_002806050.1 PREDICTED: charged multivesicular body protein 6-like, partial M. mulatta 100.0 96
NP_001078967.1 Chmp6 gene product M. musculus 96.5 199
NP_001086081.1 charged multivesicular body protein 6-A X. laevis 78.0 199
NP_001003874.1 chmp6b gene product D. rerio 72.9 199
NP_726213.1 vacuolar protein sorting 20, isoform A D. melanogaster 56.6 211
NP_490762.1 Protein VPS-20 C. elegans 51.0 204
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_001152905.3 PREDICTED: charged multivesicular body protein 6 P. troglodytes 98.9 185
NP_001099326.1 Chmp6 gene product R. norvegicus 97.5 199

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; skin; mixed; uncharacterized tissue; eye; adrenal gland; liver; blood; lung; embryonic tissue; prostate; placenta; kidney; intestine; pancreas; uterus; cervix; spleen; connective tissue; stomach; lymph; ascites; ovary; muscle; tonsil; mammary gland; heart; salivary gland; bone; testis; pituitary gland; thyroid; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q25.3
UniSTS entry: Chr 17 RH102270
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AY329087.1 Homo sapiens VPS20 mRNA, complete cds P
CR457284.1 Homo sapiens full open reading frame cDNA clone RZPDo834H039D for gene FLJ11749, hypothetical protein FLJ11749; complete cds, incl. stopcodon P
AK223187.1 Homo sapiens mRNA for hypothetical protein FLJ11749 variant, clone: REC04004 PA
AK021811.1 Homo sapiens cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to NUCLEAR PROTEIN SNF7 P
NM_024591.4 Homo sapiens charged multivesicular body protein 6 (CHMP6), mRNA PA
BC010108.2 Homo sapiens chromatin modifying protein 6, mRNA (cDNA clone MGC:19477 IMAGE:3604039), complete cds PA
AK292105.1 Homo sapiens cDNA FLJ78126 complete cds P

EST sequences (10 of 262) [Show all sequences]

AA969456.1 Clone IMAGE:1572567 kidney 3' read A
T05512.1 Clone HFBCZ89 brain
AA923217.1 Clone IMAGE:1524148 mixed 3' read A
R20135.1 Clone IMAGE:32653 brain 5' read
CB044079.1 Clone IMAGE:3217577 intestine 3' read A
CB044080.1 Clone IMAGE:3217577 intestine 5' read P
CB049006.1 Clone IMAGE:3270873 prostate 3' read A
CB049007.1 Clone IMAGE:3270873 prostate 5' read A
R25034.1 Clone IMAGE:35089 brain 5' read
CB131166.1 Clone L12JSHC0-11-G01 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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