> Autophagy related 4D, cysteine peptidase (ATG4D)
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UGID:903546     UniGene Hs.512799     Homo sapiens (human)   ATG4D Order cDNA clone, Links
Autophagy related 4D, cysteine peptidase (ATG4D)

Human protein-coding gene ATG4D. Represented by 204 ESTs from 97 cDNA libraries. Corresponds to reference sequence NM_032885.4. [UniGene 903546 - Hs.512799]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_116274.3 ATG4D gene product H. sapiens 100.0 473
XP_512373.2 PREDICTED: cysteine protease ATG4D P. troglodytes 100.0 410
NP_705811.8 Atg4d gene product M. musculus 94.7 473
NP_001087417.1 cysteine protease ATG4D X. laevis 63.5 468
XP_001333093.2 PREDICTED: cysteine protease ATG4D-like D. rerio 61.4 484
NP_650452.1 CG6194 D. melanogaster 45.5 224
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_001101860.1 PREDICTED: cysteine protease ATG4D-like isoform 1 M. mulatta 99.2 473
XP_003914938.1 PREDICTED: cysteine protease ATG4D isoform 1 P. anubis 99.2 473

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: pancreas; brain; uncharacterized tissue; lymph node; lung; muscle; placenta; adrenal gland; bone marrow; skin; mixed; thymus; testis; cervix; intestine; connective tissue; esophagus; larynx; eye; spleen; embryonic tissue; prostate; kidney; uterus; heart; salivary gland; liver; mammary gland; ovary; stomach; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 19
Map position: 19p13.2
UniSTS entry: Chr 19 RH94334
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AJ312332.1 Homo sapiens mRNA for APG4-D protein P
BC068992.1 Homo sapiens ATG4 autophagy related 4 homolog D (S. cerevisiae), mRNA (cDNA clone MGC:78385 IMAGE:6578102), complete cds PA
AK223383.1 Homo sapiens mRNA for APG4 autophagy 4 homolog D variant, clone: FCC106E12 P
BC007639.1 Homo sapiens ATG4 autophagy related 4 homolog D (S. cerevisiae), mRNA (cDNA clone IMAGE:3533566), complete cds PA
NM_032885.4 Homo sapiens autophagy related 4D, cysteine peptidase (ATG4D), mRNA PA
BC016845.1 Homo sapiens ATG4 autophagy related 4 homolog D (S. cerevisiae), mRNA (cDNA clone IMAGE:3912499), complete cds PA
AK056210.1 Homo sapiens cDNA FLJ31648 fis, clone NT2RI2004059 P
AK314712.1 Homo sapiens cDNA, FLJ95569 P
AK294676.1 Homo sapiens cDNA FLJ53984 complete cds, highly similar to Cysteine protease ATG4D (EC 3.4.22.-) P
AK316454.1 Homo sapiens cDNA, FLJ79353 complete cds, highly similar to Cysteine protease ATG4D (EC 3.4.22.-) P

EST sequences (10 of 204) [Show all sequences]

AA960836.1 Clone IMAGE:1564606 mixed 3' read A
AA992357.1 Clone IMAGE:1618900 testis 3' read A
AA926927.1 Clone IMAGE:1552352 uncharacterized tissue 3' read
AI198686.1 Clone IMAGE:1753575 testis 3' read A
CB161138.1 Clone L18POOL1n1-16-B01 liver 5' read P
AA886802.1 Clone IMAGE:1501549 kidney 3' read A
AI199912.1 Clone IMAGE:1756712 lung 3' read A
R38541.1 Clone IMAGE:22760 brain 3' read A
AI473231.1 Clone IMAGE:2122363 kidney 3' read
AI475464.1 Clone IMAGE:2153731 intestine 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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