Nucleoporin 43kDa (NUP43)

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UGID:725534 UniGene Hs.510375 Homo sapiens (human) NUP43

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Nucleoporin 43kDa (NUP43)

Human protein-coding gene NUP43. Represented by 234 ESTs from 148 cDNA libraries. Corresponds to reference sequence NM_198887.1. [UniGene 725534 - Hs.510375]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_527530.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: uncharacterized protein LOC472151	P. troglodytes	100.0	379
NP_942590.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	NUP43 gene product	H. sapiens	100.0	379
NP_663752.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Nup43 gene product	M. musculus	95.8	379
NP_001090382.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	nucleoporin 43kDa	X. laevis	75.9	372
NP_998057.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	nup43 gene product	D. rerio	71.3	370
Other hits (2 of 24) [Show all]		Species	Id(%)	Len(aa)
XP_003898108.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: nucleoporin Nup43	P. anubis	99.2	379
XP_541148.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: nucleoporin Nup43	C. lupus familiaris	97.4	379

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; uncharacterized tissue; blood; lymph node; pharynx; placenta; uterus; skin; larynx; kidney; eye; stomach; mixed; connective tissue; bone marrow; testis; embryonic tissue; ovary; prostate; liver; intestine; muscle; spleen; heart; mouth; trachea; parathyroid; lung; thyroid; salivary gland; cervix; lymph; ascites; bone; vascular; pancreas; mammary gland; thymus

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	6
Map position:	6q25.1
UniSTS entry:	Chr 6	A009Z40
UniSTS entry:	Chr 6	RH102466
UniSTS entry:		G33028
UniSTS entry:	Chr 1	GDB:434012
UniSTS entry:	Chr 1	D8S2279

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

BC046637.1	Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone IMAGE:5297868)	PA
BC047539.1	Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone IMAGE:5270277)	PA
BX647097.1	Homo sapiens mRNA; cDNA DKFZp686H19158 (from clone DKFZp686H19158)	PA
NM_198887.1	Homo sapiens nucleoporin 43kDa (NUP43), transcript variant 1, mRNA	PA
BC065028.1	Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone MGC:70545 IMAGE:6042215), complete cds	PA
AK023349.1	Homo sapiens cDNA FLJ13287 fis, clone OVARC1001161	P
AK095994.1	Homo sapiens cDNA FLJ38675 fis, clone IMR322000243, highly similar to Nucleoporin Nup43	P
AF514997.1	Homo sapiens nucleoporin Nup43 mRNA, complete cds	P
AK301027.1	Homo sapiens cDNA FLJ54281 complete cds, highly similar to Nucleoporin Nup43	P
AK304505.1	Homo sapiens cDNA FLJ61080 complete cds, highly similar to Nucleoporin Nup43	P
AK304244.1	Homo sapiens cDNA FLJ53749 complete cds, moderately similar to Nucleoporin Nup43	P
BC040121.1	Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone IMAGE:5552687), partial cds	PA

EST sequences (10 of 234) [Show all sequences]

AI040911.1	Clone IMAGE:1647956	parathyroid	3' read	A
AI056066.1	Clone IMAGE:1659377	embryonic tissue	3' read
CB162100.1	Clone L17N670205n1-17-D03	liver	5' read
CB113165.1	Clone L6ChoCK0-11-A09	liver	5' read	A
CB119642.1	Clone L8SCK0-34-F08	liver	5' read
CB116535.1	Clone L10ChoCK0-10-A01	liver	5' read
CB131619.1	Clone L14ChoiCK0-4-A09	liver	5' read
AI084247.1	Clone IMAGE:1668258	parathyroid	3' read	A
AI301432.1	Clone IMAGE:1894257	placenta	3' read	P
AI351152.1	Clone IMAGE:1947328	uncharacterized tissue	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria