> Tripartite motif containing 4 (TRIM4)
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UGID:137983     UniGene Hs.50749     Homo sapiens (human)   TRIM4 Order cDNA clone, Links
Tripartite motif containing 4 (TRIM4)

Human protein-coding gene TRIM4. Represented by 185 ESTs from 114 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 137983 - Hs.50749]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_519244.2 PREDICTED: tripartite motif-containing protein 4 isoform 2 P. troglodytes 100.0 499
NP_148977.2 TRIM4 gene product H. sapiens 100.0 499
NP_112449.1 Trim17 gene product M. musculus 47.3 220
Other hits (2 of 9) [Show all]SpeciesId(%)Len(aa)
XP_003895808.1 PREDICTED: tripartite motif-containing protein 4 P. anubis 97.5 473
XP_850838.1 PREDICTED: tripartite motif-containing protein 4 C. lupus familiaris 81.7 474

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; mouth; bone marrow; uncharacterized tissue; pancreas; uterus; lung; prostate; mammary gland; placenta; skin; eye; liver; intestine; embryonic tissue; spleen; thyroid; testis; heart; muscle; larynx; connective tissue; pituitary gland; lymph; cervix; lymph node; kidney; ovary; bone; pharynx; stomach
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7q22-q31.1
UniSTS entry: Chr 7 SHGC-36880 [Map Viewer]
UniSTS entry: Chr 7 NIB1997
UniSTS entry: Chr 7 TRIM4_2288
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AF220024.1 Homo sapiens tripartite motif protein TRIM4 isoform beta (TRIM4) mRNA, complete cds; alternatively spliced PA
AF220023.1 Homo sapiens tripartite motif protein TRIM4 isoform alpha (TRIM4) mRNA, complete cds; alternatively spliced PA
NM_033017.3 Homo sapiens tripartite motif containing 4 (TRIM4), transcript variant alpha, mRNA PA
NM_033091.2 Homo sapiens tripartite motif containing 4 (TRIM4), transcript variant beta, mRNA PA
BC011763.2 Homo sapiens tripartite motif-containing 4, mRNA (cDNA clone MGC:19745 IMAGE:3617674), complete cds PA
BC025949.1 Homo sapiens tripartite motif-containing 4, mRNA (cDNA clone MGC:39082 IMAGE:4620469), complete cds PA
AK092892.1 Homo sapiens cDNA FLJ35573 fis, clone SPLEN2005927, highly similar to Tripartite motif-containing protein 4 P
AK293565.1 Homo sapiens cDNA FLJ60086 complete cds, highly similar to Tripartite motif-containing protein 4 P

EST sequences (10 of 185) [Show all sequences]

AA992148.1 Clone IMAGE:1622085 embryonic tissue 3' read
AA927201.1 Clone IMAGE:1540456 mixed 3' read P
AI004200.1 Clone IMAGE:1624445 embryonic tissue 3' read P
AI139030.1 Clone IMAGE:1710380 uterus 3' read A
CB070268.1 Clone IMAGE:6553634 pancreas 5' read
BX113412.1 Clone IMAGp998J21588_;_IMAGE:268148 skin A
AI202226.1 Clone IMAGE:1942946 prostate 3' read A
CB154036.1 Clone B1T694954-32-D10 brain 5' read P
CB217057.1 Clone IMAGE:5938812 uterus 5' read P
AI436649.1 Clone IMAGE:2126000 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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