> Sorting nexin 4 (SNX4)
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UGID:722402     UniGene Hs.507243     Homo sapiens (human)   SNX4 Order cDNA clone, Links
Sorting nexin 4 (SNX4)

Human protein-coding gene SNX4. Represented by 397 ESTs from 180 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 722402 - Hs.507243]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001169563.2 PREDICTED: sorting nexin-4 isoform 2 P. troglodytes 100.0 449
NP_003785.1 SNX4 gene product H. sapiens 100.0 449
XP_003894089.1 PREDICTED: sorting nexin-4 isoform 1 P. anubis 99.6 449
NP_542124.1 Snx4 gene product M. musculus 97.6 449
NP_001014368.1 snx4 gene product D. rerio 86.8 408
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_001114118.1 PREDICTED: sorting nexin-4 M. mulatta 99.1 448
XP_535771.2 PREDICTED: sorting nexin-4 C. lupus familiaris 98.8 402

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; placenta; prostate; uncharacterized tissue; embryonic tissue; mouth; vascular; mammary gland; heart; testis; kidney; mixed; pharynx; connective tissue; trachea; muscle; uterus; adrenal gland; ovary; esophagus; cervix; stomach; skin; lymph node; liver; pituitary gland; blood; intestine; eye; bladder; pancreas; lung; ascites; bone; ganglia; umbilical cord; spleen; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q21.2
UniSTS entry: Chr 3 D3S4226
UniSTS entry: Chr 3 RH103376
UniSTS entry: Chr 3 SNX4
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AF065485.1 Homo sapiens sorting nexin 4 mRNA, complete cds P
NM_003794.3 Homo sapiens sorting nexin 4 (SNX4), transcript variant 1, mRNA A
AK001835.1 Homo sapiens cDNA FLJ10973 fis, clone PLACE1001092, highly similar to Sorting nexin-4 P
BC018762.1 Homo sapiens sorting nexin 4, mRNA (cDNA clone MGC:31982 IMAGE:4641014), complete cds PA
AK298972.1 Homo sapiens cDNA FLJ50837 complete cds, highly similar to Sorting nexin-4 P
AF130078.1 Homo sapiens clone FLB9739 PRO2637 mRNA, complete cds PA
NR_073435.1 Homo sapiens sorting nexin 4 (SNX4), transcript variant 2, non-coding RNA A

EST sequences (10 of 397) [Show all sequences]

AI003993.1 Clone IMAGE:1625190 embryonic tissue 3' read A
AA922683.1 Clone IMAGE:1551749 uncharacterized tissue 3' read
AI080478.1 Clone IMAGE:1610787 uncharacterized tissue 3' read A
AI092325.1 Clone IMAGE:1692595 heart 3' read A
R21934.1 Clone IMAGE:130659 placenta 5' read
R22583.1 Clone IMAGE:130659 placenta 3' read A
AI125497.1 Clone IMAGE:1737093 testis 3' read A
BX099262.1 Clone IMAGp998L061167_;_IMAGE:490517 uterus
AI187416.1 Clone IMAGE:1751630 testis 3' read A
CB159329.1 Clone L18POOL1n1-30-C10 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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