> Transmembrane protein 116 (TMEM116)
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UGID:721974     UniGene Hs.506815     Homo sapiens (human)   TMEM116 Order cDNA clone, Links
Transmembrane protein 116 (TMEM116)

Human protein-coding gene TMEM116. Represented by 159 ESTs from 94 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 721974 - Hs.506815]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001180460.1 TMEM116 gene product H. sapiens 100.0 336
XP_509382.2 PREDICTED: transmembrane protein 116 isoform 6 P. troglodytes 99.7 336
NP_001155099.1 transmembrane protein 116 isoform 1 M. musculus 74.9 363
Other hits (2 of 15) [Show all]SpeciesId(%)Len(aa)
XP_003907224.1 PREDICTED: transmembrane protein 116 isoform 1 P. anubis 98.5 336
XP_002798835.1 PREDICTED: transmembrane protein 116-like, partial M. mulatta 97.7 131

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; lung; mixed; uncharacterized tissue; eye; prostate; muscle; pharynx; embryonic tissue; mammary gland; ganglia; parathyroid; lymph node; kidney; esophagus; heart; placenta; bladder; mouth; spleen; connective tissue; uterus; lymph; trachea; thymus; pancreas; blood; salivary gland; intestine; liver; skin; nerve; umbilical cord; bone; ovary; adrenal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q24.13
UniSTS entry: Chr 12 G19891
UniSTS entry: Chr 12 A002B25 [Map Viewer]
UniSTS entry: Chr 12 A008B05 [Map Viewer]
UniSTS entry: Chr 1 D3S1673
UniSTS entry: Chr 1 GDB:434012
UniSTS entry: Chr 1 D22S296
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 1 D1S1425
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

BC048796.1 Homo sapiens transmembrane protein 116, mRNA (cDNA clone MGC:54277 IMAGE:5193616), complete cds PA
BC070135.1 Homo sapiens transmembrane protein 116, mRNA (cDNA clone MGC:88115 IMAGE:3839474), complete cds PA
BC000282.1 Homo sapiens transmembrane protein 116, mRNA (cDNA clone IMAGE:3355813), partial cds PA
AK092832.1 Homo sapiens cDNA FLJ35513 fis, clone SPLEN2000516
AL833501.1 Homo sapiens mRNA; cDNA DKFZp686P0929 (from clone DKFZp686P0929) PA
AK074648.1 Homo sapiens cDNA FLJ90167 fis, clone MAMMA1000141 P
BC022360.1 Homo sapiens transmembrane protein 116, mRNA (cDNA clone IMAGE:4686573), partial cds PA
NM_001193453.1 Homo sapiens transmembrane protein 116 (TMEM116), transcript variant 2, mRNA P
NM_001193531.1 Homo sapiens transmembrane protein 116 (TMEM116), transcript variant 1, mRNA P
NM_138341.2 Homo sapiens transmembrane protein 116 (TMEM116), transcript variant 3, mRNA P

EST sequences (10 of 159) [Show all sequences]

AI015605.1 Clone IMAGE:1638760 testis 3' read
AI022127.1 Clone IMAGE:1650879 parathyroid 3' read A
AI027999.1 Clone IMAGE:1646126 parathyroid 3' read A
AI075231.1 Clone IMAGE:1667570 parathyroid 3' read A
AI205763.1 Clone IMAGE:1836898 testis 3' read A
AI208862.1 Clone IMAGE:1838111 testis 3' read A
AI219053.1 Clone IMAGE:1759694 placenta 3' read
CB128724.1 Clone L11SNU354-10-B06 liver 5' read P
AA904123.1 Clone IMAGE:1440396 ganglia 3' read A
AI306383.1 Clone IMAGE:1898058 lung 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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