> Host cell factor C2 (HCFC2)
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UGID:721717     UniGene Hs.506558     Homo sapiens (human)   HCFC2 Order cDNA clone, Links
Host cell factor C2 (HCFC2)

Human protein-coding gene HCFC2. Represented by 177 ESTs from 85 cDNA libraries. Corresponds to reference sequence NM_013320.2. [UniGene 721717 - Hs.506558]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_037452.1 HCFC2 gene product H. sapiens 100.0 791
XP_001097074.1 PREDICTED: host cell factor 2 isoform 3 M. mulatta 99.9 791
XP_509326.2 PREDICTED: host cell factor 2 isoform 3 P. troglodytes 99.8 791
XP_003907117.1 PREDICTED: LOW QUALITY PROTEIN: host cell factor 2 P. anubis 99.6 784
NP_001074687.1 host cell factor 2 M. musculus 94.7 716
NP_001017706.1 hcfc2 gene product D. rerio 81.1 212
NP_001087989.1 uncharacterized protein LOC494675 X. laevis 66.6 2061
NP_001245420.1 host cell factor, isoform E D. melanogaster 59.9 1382
NP_501279.1 Protein HCF-1 C. elegans 52.1 739
Other hits (2 of 34) [Show all]SpeciesId(%)Len(aa)
XP_532674.2 PREDICTED: host cell factor 2 isoform 1 C. lupus familiaris 98.3 789
NP_001179877.1 host cell factor 2 B. taurus 98.1 791

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; uncharacterized tissue; liver; thyroid; muscle; stomach; mixed; lymph node; uterus; kidney; adipose tissue; esophagus; bone marrow; embryonic tissue; prostate; intestine; placenta; parathyroid; vascular; blood; lung; cervix; trachea; thymus; connective tissue; skin; ear; eye; mammary gland; bone; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q23.3
UniSTS entry: Chr 12 RH103342
UniSTS entry: Chr 12 SHGC-64926
UniSTS entry: Chr 12 STS-H93140 [Map Viewer]
UniSTS entry: Chr 12 SHGC-142174
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

NM_013320.2 Homo sapiens host cell factor C2 (HCFC2), mRNA PA
AF117210.1 Homo sapiens host cell factor 2 (HCF-2) mRNA, complete cds P
AK223342.1 Homo sapiens mRNA for host cell factor C2 variant, clone: TST01027 PA
AK313466.1 Homo sapiens cDNA, FLJ94012, Homo sapiens host cell factor 2 (HCF-2), mRNA P
BC033799.1 Homo sapiens host cell factor C2, mRNA (cDNA clone MGC:45151 IMAGE:5172046), complete cds PA
AK296523.1 Homo sapiens cDNA FLJ58092 complete cds, highly similar to Host cell factor 2 P

EST sequences (10 of 177) [Show all sequences]

AI077497.1 Clone IMAGE:1678659 mixed 3' read PA
AI160796.1 Clone IMAGE:1715463 placenta 3' read PA
BX116970.1 Clone IMAGp998E16729_;_IMAGE:322167 parathyroid P
BX091992.1 Clone IMAGp998F154914_;_IMAGE:1998734 stomach A
CB129324.1 Clone C1SNU17-4-D07 cervix 5' read P
CB136198.1 Clone L14ChoiCK0-14-D06 liver 5' read P
AI247087.1 Clone IMAGE:1998734 stomach 3' read A
AA724269.1 Clone IMAGE:1326429 mixed 3' read PA
AI351064.1 Clone IMAGE:1948331 uncharacterized tissue 3' read A
AI580890.1 Clone IMAGE:2048960 embryonic tissue 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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