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UGID:713180     UniGene Hs.498021     Homo sapiens (human)   CAPN9
Calpain 9 (CAPN9)

Human protein-coding gene CAPN9. Represented by 32 ESTs from 24 cDNA libraries. EST representation biased toward adult. Corresponds to 2 reference sequences (different isoforms). [UniGene 713180 - Hs.498021]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_006606.1 CAPN9 gene product H. sapiens 100.0 689
XP_001148632.1 PREDICTED: calpain-9 isoform 5 P. troglodytes 99.9 689
NP_076198.2 Capn9 gene product M. musculus 88.0 689
NP_001085997.1 calpain 9 X. laevis 73.7 692
NP_001003501.1 capn9 gene product D. rerio 67.7 687
NP_498740.2 Protein CLP-1, isoform b C. elegans 54.9 503
NP_524016.4 Calpain-B, isoform A D. melanogaster 53.5 688
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_003893827.1 PREDICTED: calpain-9 isoform 1 P. anubis 98.7 689
XP_850025.2 PREDICTED: calpain-9 isoform 2 C. lupus familiaris 92.9 691

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: adult [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; uncharacterized tissue; brain; intestine; mouth; trachea; uterus; stomach; thymus; mixed; ascites; eye; pharynx; prostate; embryonic tissue
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q42.11-q42.3
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

NM_006615.2 Homo sapiens calpain 9 (CAPN9), transcript variant 1, mRNA P
BC027993.1 Homo sapiens calpain 9, mRNA (cDNA clone MGC:39972 IMAGE:5173512), complete cds PA
AB038463.1 Homo sapiens GC36 mRNA, complete cds P
NM_016452.1 Homo sapiens calpain 9 (CAPN9), transcript variant 2, mRNA P
AK309039.1 Homo sapiens cDNA, FLJ99080 P
AK313629.1 Homo sapiens cDNA, FLJ94200, highly similar to Homo sapiens calpain 9 (nCL-4) (CAPN9), mRNA P
AK298024.1 Homo sapiens cDNA FLJ52338 complete cds, highly similar to Calpain-9 (EC 3.4.22.-) P
AF022799.1 Homo sapiens digestive tract-specific calpain (nCL-4) mRNA, complete cds P

EST sequences (10 of 32) [Show all sequences]

AI074272.1 Clone IMAGE:1594461 intestine 3' read P
AI733427.1 Clone IMAGE:1594461 intestine 3' read P
AI870462.1 Clone IMAGE:2427993 uterus 3' read
CD692048.1 pharynx P
CF139910.1 Clone IMAGE:3097503 prostate 5' read
BX956884.1 Clone DKFZp781M0592 uncharacterized tissue 5' read P
BP293386.1 Clone LNG11852 lung 5' read P
BP293617.1 Clone LNG13271 lung 5' read P
DN995165.1 Clone TC124134 brain 5' read
DA315641.1 Clone BRHIP3006178 brain 5' read P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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