> Activating transcription factor 6 (ATF6)
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UGID:707899     UniGene Hs.492740     Homo sapiens (human)   ATF6 Links
Activating transcription factor 6 (ATF6)

Human protein-coding gene ATF6. Represented by 520 ESTs from 229 cDNA libraries. Corresponds to reference sequence NM_007348.3. [UniGene 707899 - Hs.492740]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_031374.2 ATF6 gene product H. sapiens 100.0 669
XP_001174215.1 PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha isoform 3 P. troglodytes 99.8 669
NP_001074773.1 Atf6 gene product M. musculus 91.3 655
NP_001103989.1 atf6 gene product D. rerio 54.9 623
NP_001088791.1 activating transcription factor 6 X. laevis 54.7 499
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003893029.1 PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha P. anubis 98.8 668
XP_001118153.2 PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha-like M. mulatta 98.8 651

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; lung; kidney; testis; uncharacterized tissue; esophagus; liver; pancreas; mammary gland; vascular; intestine; bone marrow; cervix; thyroid; lymph node; salivary gland; umbilical cord; bladder; mouth; skin; uterus; connective tissue; eye; prostate; stomach; bone; placenta; embryonic tissue; spleen; thymus; adrenal gland; trachea; heart; blood; muscle; pharynx; ascites; pituitary gland; pineal gland; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q22-q23
UniSTS entry: Chr 1 SHGC-32839 [Map Viewer]
UniSTS entry: Chr 1 RH68768
UniSTS entry: Chr 1 WI-13539 [Map Viewer]
UniSTS entry: Chr 1 PMC156606P2
UniSTS entry: Chr 1 PMC156606P3
UniSTS entry: Chr 1 PMC156606P4
UniSTS entry: Chr 1 D1S1425
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 1 D8S2278
UniSTS entry: Chr 1 sY3084
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AB015856.1 Homo sapiens mRNA for ATF6, complete cds P
BX538263.1 Homo sapiens mRNA; cDNA DKFZp686P2194 (from clone DKFZp686P2194) A
NM_007348.3 Homo sapiens activating transcription factor 6 (ATF6), mRNA PA
BC071997.1 Homo sapiens activating transcription factor 6, mRNA (cDNA clone IMAGE:6379669), complete cds PA
AB208929.1 Homo sapiens mRNA for activating transcription factor 6 variant protein P
AK025316.1 Homo sapiens cDNA: FLJ21663 fis, clone COL08885 A
BC014969.1 Homo sapiens activating transcription factor 6, mRNA (cDNA clone IMAGE:4908463), complete cds PA
AK290498.1 Homo sapiens cDNA FLJ75428 complete cds, highly similar to Homo sapiens activating transcription factor 6 (ATF6), mRNA P
AF088035.1 Homo sapiens full length insert cDNA clone ZC26G04
AF005887.1 Homo sapiens ATF family member ATF6 (ATF6) mRNA, complete cds PA

EST sequences (10 of 520) [Show all sequences]

AA954768.1 Clone IMAGE:1560694 mixed 3' read
AA972270.1 Clone IMAGE:1584025 mixed 3' read P
AA974121.1 Clone IMAGE:1585594 lung 3' read
R15188.1 Clone IMAGE:29169 brain 5' read
AI015792.1 Clone IMAGE:1623374 embryonic tissue 3' read A
AI021978.1 Clone IMAGE:1655359 mixed 3' read P
AI056950.1 Clone IMAGE:1672969 mixed 3' read P
AI139032.1 Clone IMAGE:1710361 uterus 3' read P
AI146495.1 Clone IMAGE:1706834 heart 3' read P
CB052240.1 Clone IMAGE:3290249 uncharacterized tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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