> Single-stranded DNA binding protein 1, mitochondrial (SSBP1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:705553     UniGene Hs.490394     Homo sapiens (human)   SSBP1 Order cDNA clone, Links
Single-stranded DNA binding protein 1, mitochondrial (SSBP1)

Human protein-coding gene SSBP1. Represented by 546 ESTs from 174 cDNA libraries. Corresponds to 6 reference sequences (different isoforms). [UniGene 705553 - Hs.490394]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001156267.1 PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform 3 P. troglodytes 100.0 147
NP_001243439.1 SSBP1 gene product H. sapiens 100.0 147
NP_997633.1 Ssbp1 gene product M. musculus 94.6 147
NP_001091326.1 single-stranded DNA-binding protein 1-B, mitochondrial X. laevis 83.0 147
NP_001017806.1 ssbp1 gene product D. rerio 80.1 145
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_003896744.1 PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform 1 P. anubis 99.3 147
XP_001084295.1 PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform 3 M. mulatta 98.7 147

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: pancreas; skin; brain; mixed; umbilical cord; placenta; thymus; thyroid; embryonic tissue; liver; esophagus; kidney; uncharacterized tissue; blood; intestine; testis; eye; parathyroid; spinal cord; lung; stomach; mouth; uterus; prostate; ovary; heart; salivary gland; lymph node; trachea; mammary gland; ear; pharynx; bladder; connective tissue; ascites; bone; bone marrow; cervix; vascular; muscle
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7q34
UniSTS entry: Chr 7 WI-17072 [Map Viewer]
UniSTS entry: Chr 7 RH47311
UniSTS entry: Chr 7 WI-22640 [Map Viewer]
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

M94556.1 Human mitochondrial specific single stranded DNA binding protein mRNA, complete cds P
NM_003143.2 Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), nuclear gene encoding mitochondrial protein, transcript variant 5, mRNA P
BC093054.1 Homo sapiens single-stranded DNA binding protein 1, mRNA (cDNA clone MGC:111135 IMAGE:30722138), complete cds PA
BC000895.1 Homo sapiens single-stranded DNA binding protein 1, mRNA (cDNA clone MGC:5185 IMAGE:3464282), complete cds PA
BC008402.1 Homo sapiens single-stranded DNA binding protein 1, mRNA (cDNA clone IMAGE:4294746), partial cds A
AF277319.1 Homo sapiens single-stranded DNA-binding protein mRNA, complete cds P
AK313033.1 Homo sapiens cDNA, FLJ93504, Homo sapiens single-stranded DNA binding protein 1 (SSBP1), mRNA P
AK294393.1 Homo sapiens cDNA FLJ51825 complete cds, highly similar to Single-stranded DNA-binding protein, mitochondrial precursor P
NM_001256513.1 Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), nuclear gene encoding mitochondrial protein, transcript variant 4, mRNA P
NM_001256511.1 Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA P
NM_001256512.1 Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), nuclear gene encoding mitochondrial protein, transcript variant 3, mRNA P
NM_001256510.1 Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA P
NR_046269.1 Homo sapiens single-stranded DNA binding protein 1, mitochondrial (SSBP1), transcript variant 6, non-coding RNA P

EST sequences (10 of 546) [Show all sequences]

AA969825.1 Clone IMAGE:1572731 kidney 3' read PA
AA975881.1 Clone IMAGE:1558320 lung 3' read P
AA999810.1 Clone IMAGE:1607933 mammary gland 3' read PA
AA910715.1 Clone IMAGE:1521181 lung 3' read A
AA907624.1 Clone IMAGE:1540644 mixed 3' read PA
AI022113.1 Clone IMAGE:1650866 parathyroid 3' read PA
CB069484.1 Clone IMAGE:6364952 pancreas 5' read P
AI250861.1 Clone IMAGE:2000942 lymph node 3' read PA
AI264597.1 Clone IMAGE:1869400 kidney 3' read P
CB159144.1 Clone L18POOL1n1-36-A01 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help