> SAM pointed domain containing ets transcription factor (SPDEF)
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UGID:700317     UniGene Hs.485158     Homo sapiens (human)   SPDEF Order cDNA clone, Links
SAM pointed domain containing ets transcription factor (SPDEF)

Human protein-coding gene SPDEF. Represented by 462 ESTs from 51 cDNA libraries. EST representation biased toward breast (mammary gland) tumor; adult. Corresponds to 2 reference sequences (different isoforms). [UniGene 700317 - Hs.485158]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_036523.1 SPDEF gene product H. sapiens 100.0 334
NP_038919.1 Spdef gene product M. musculus 92.0 324
XP_001343077.1 PREDICTED: SAM pointed domain-containing Ets transcription factor-like D. rerio 79.8 316
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_001116514.2 PREDICTED: SAM pointed domain-containing Ets transcription factor-like M. mulatta 99.0 189
XP_518416.2 PREDICTED: SAM pointed domain-containing Ets transcription factor isoform 2 P. troglodytes 98.8 334

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: breast (mammary gland) tumor [show more like this]
adult [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mammary gland; lung; prostate; ovary; brain; mixed; uterus; intestine; uncharacterized tissue; ascites; pancreas; nerve
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AF071538.1 Homo sapiens Ets transcription factor PDEF (PDEF) mRNA, complete cds P
NM_012391.2 Homo sapiens SAM pointed domain containing ets transcription factor (SPDEF), transcript variant 1, mRNA PA
AB031549.1 Homo sapiens PSE mRNA for prostate ets, complete cds PA
BC021299.2 Homo sapiens SAM pointed domain containing ets transcription factor, mRNA (cDNA clone MGC:29592 IMAGE:4546860), complete cds PA
AK301543.1 Homo sapiens cDNA FLJ59217 complete cds, highly similar to SAM pointed domain-containing Ets transcription factor P
NM_001252294.1 Homo sapiens SAM pointed domain containing ets transcription factor (SPDEF), transcript variant 2, mRNA PA

EST sequences (10 of 462) [Show all sequences]

CB049255.1 Clone IMAGE:3271424 prostate 5' read P
CB049254.1 Clone IMAGE:3271424 prostate 3' read A
CB049744.1 Clone IMAGE:3271541 prostate 5' read
CB049743.1 Clone IMAGE:3271541 prostate 3' read
CB050161.1 Clone IMAGE:3271750 prostate 3' read A
CB050162.1 Clone IMAGE:3271750 prostate 5' read P
CB051116.1 Clone IMAGE:3289337 prostate 5' read A
AI250318.1 Clone IMAGE:2002134 ovary 3' read A
AI250382.1 Clone IMAGE:2002201 ovary 3' read A
AI250405.1 Clone IMAGE:2002243 ovary 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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