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UGID:696361     UniGene Hs.481202     Homo sapiens (human)   RPF1
Ribosome production factor 1 homolog (S. cerevisiae) (RPF1)

Human protein-coding gene RPF1. Represented by 308 ESTs from 167 cDNA libraries. Corresponds to reference sequence NM_025065.6. [UniGene 696361 - Hs.481202]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_524755.2 PREDICTED: ribosome production factor 1 isoform 2 P. troglodytes 100.0 348
NP_079341.2 RPF1 gene product H. sapiens 100.0 348
NP_081647.2 ribosome production factor 1 isoform 2 M. musculus 98.3 348
NP_001080272.1 ribosome production factor 1 X. laevis 86.6 342
NP_001002160.2 ribosome production factor 1 isoform 1 D. rerio 83.2 350
NP_477479.1 CG6712 D. melanogaster 60.1 287
NP_495918.1 Protein F44G4.1 C. elegans 59.9 353
NP_567213.1 ribosomal RNA processing brix domain-containing protein A. thaliana 58.3 306
NP_011956.1 Rpf1p S. cerevisiae 55.0 286
XP_001692157.1 hypothetical protein CHLREDRAFT_115941 C. reinhardtii 55.0 308
Other hits (2 of 60) [Show all]SpeciesId(%)Len(aa)
XP_001106723.1 PREDICTED: ribosome production factor 1-like isoform 3 M. mulatta 99.4 348
XP_001497217.1 PREDICTED: ribosome production factor 1-like E. caballus 98.6 348

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; brain; embryonic tissue; testis; prostate; eye; lung; mixed; mammary gland; skin; muscle; spleen; connective tissue; liver; lymph node; intestine; ovary; stomach; kidney; pharynx; placenta; pancreas; bone; adrenal gland; blood; bladder; salivary gland; tonsil; uterus; vascular; thyroid; parathyroid; heart; mouth; umbilical cord; thymus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p22.3
UniSTS entry: BE109298
UniSTS entry: Chr 1 D2S1920
UniSTS entry: Chr 1 SHGC-34553 [Map Viewer]
UniSTS entry: Chr 1 RH68298
UniSTS entry: Chr 1 BXDC5
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

CR627468.1 Homo sapiens mRNA; cDNA DKFZp761M0215 (from clone DKFZp761M0215) PA
AL359584.2 Homo sapiens mRNA; cDNA DKFZp761G0415 (from clone DKFZp761G0415) PA
AK022537.1 Homo sapiens cDNA FLJ12475 fis, clone NT2RM1000962 P
NM_025065.6 Homo sapiens ribosome production factor 1 homolog (S. cerevisiae) (RPF1), mRNA P
BC016051.1 Homo sapiens brix domain containing 5, mRNA (cDNA clone MGC:22954 IMAGE:4853072), complete cds PA
AF322053.1 Homo sapiens RNA processing factor 1 (RPF1) mRNA, complete cds P

EST sequences (10 of 308) [Show all sequences]

AA973741.1 Clone IMAGE:1586025 uncharacterized tissue 3' read PA
BX112454.1 Clone IMAGp998P224818_;_IMAGE:1962117 intestine A
CB161373.1 Clone L18POOL1n1-38-H04 liver 5' read P
CB106665.1 Clone L3SNU475-7-B10 liver 5' read P
CB114810.1 Clone L3SNU475s1-9-C02 liver 5' read A
CB155006.1 Clone B2N807043-31-E11 brain 5' read P
CB134662.1 Clone L14ChoiCK0-15-E08 liver 5' read P
CB144542.1 Clone L9SNU354-13-G04 liver 5' read P
CB146785.1 Clone L9SNU354-16-D05 liver 5' read PA
AI200523.1 Clone IMAGE:1756993 lung 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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