> Sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3)
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UGID:696292     UniGene Hs.481133     Homo sapiens (human)   SPOCK3 Order cDNA clone, Links
Sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3)

Human protein-coding gene SPOCK3. Represented by 560 ESTs from 62 cDNA libraries. EST representation biased toward adult. Corresponds to 9 reference sequences (different isoforms). [UniGene 696292 - Hs.481133]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_058646.2 SPOCK3 gene product H. sapiens 100.0 435
XP_001151238.1 PREDICTED: testican-3 isoform 5 P. troglodytes 99.8 435
XP_003899395.1 PREDICTED: LOW QUALITY PROTEIN: testican-3 P. anubis 99.5 414
NP_076178.1 testican-3 isoform 1 precursor M. musculus 94.5 435
XP_690495.2 PREDICTED: LOW QUALITY PROTEIN: testican-3 isoform 2 D. rerio 60.9 384
NP_001086292.1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 precursor X. laevis 53.2 415
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_001102343.2 PREDICTED: testican-3 isoform 4 M. mulatta 98.7 468
XP_001499466.2 PREDICTED: testican-3 isoform 1 E. caballus 96.8 312

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: adult [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; parathyroid; mixed; lung; testis; pancreas; embryonic tissue; ear; muscle; prostate; trachea; larynx; connective tissue; vascular
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4q32.3
UniSTS entry: Chr 4 SHGC-44435
UniSTS entry: Chr 4 SHGC-67641
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (25)

AJ001454.1 Homo sapiens mRNA for testican-3 P
AY358973.1 Homo sapiens clone DNA49829 HSAJ1454 (UNQ409) mRNA, complete cds PA
NM_016950.2 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 2, mRNA P
NM_001040159.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 1, mRNA P
BC003017.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3, mRNA (cDNA clone MGC:4047 IMAGE:2822303), complete cds PA
BC000460.2 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3, mRNA (cDNA clone MGC:8506 IMAGE:2822303), complete cds PA
BC013983.2 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3, mRNA (cDNA clone MGC:20285 IMAGE:4110883), complete cds P
AB056866.1 Homo sapiens N-Tes mRNA for testican 3 splicing variant, complete cds PA
AK313042.1 Homo sapiens cDNA, FLJ93516, highly similar to Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), mRNA P
AK091078.1 Homo sapiens cDNA FLJ33759 fis, clone BRCOC1000094, highly similar to Testican-3 precursor P
AK294637.1 Homo sapiens cDNA FLJ59506 complete cds, highly similar to Testican-3 precursor PA
AK294346.1 Homo sapiens cDNA FLJ59873 complete cds, highly similar to Testican-3 precursor P
AK294293.1 Homo sapiens cDNA FLJ55965 complete cds, highly similar to Testican-3 precursor P
AK296291.1 Homo sapiens cDNA FLJ59551 complete cds, highly similar to Testican-3 precursor P
AK295414.1 Homo sapiens cDNA FLJ59526 complete cds, highly similar to Testican-3 precursor PA
AK295407.1 Homo sapiens cDNA FLJ59525 complete cds, highly similar to Testican-3 precursor P
AK295281.1 Homo sapiens cDNA FLJ59522 complete cds, highly similar to Testican-3 precursor P
AK295015.1 Homo sapiens cDNA FLJ59686 complete cds, highly similar to Testican-3 precursor P
NM_001204356.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 7, mRNA PA
NM_001204358.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 9, mRNA PA
NM_001204355.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 6, mRNA PA
NM_001204354.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 5, mRNA PA
NM_001204353.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 4, mRNA PA
NM_001204352.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 3, mRNA PA
NM_001251967.1 Homo sapiens sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 (SPOCK3), transcript variant 11, mRNA PA

EST sequences (10 of 560) [Show all sequences]

AA992921.1 Clone IMAGE:1624225 embryonic tissue 3' read
AI023144.1 Clone IMAGE:1650571 parathyroid 3' read A
AI038716.1 Clone IMAGE:1658350 embryonic tissue 3' read A
AI040877.1 Clone IMAGE:1647565 parathyroid 3' read A
AI808090.1 Clone IMAGE:2363069 mixed 3' read A
BX433451.2 Clone CS0DN003YL16 brain 3' read P
BX444556.2 Clone CS0DN003YL16 brain 3' read A
BX463580.2 Clone CS0DN003YL16 brain 5' read P
BX452701.2 Clone CS0DN003YL16 brain 5' read P
BX452702.2 Clone CS0DN003YL16 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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