> Vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52)
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UGID:695515     UniGene Hs.480356     Homo sapiens (human)   VPS52 Order cDNA clone, Links
Vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52)

Human protein-coding gene VPS52. Represented by 682 ESTs from 258 cDNA libraries. Corresponds to reference sequence NM_022553.4. [UniGene 695515 - Hs.480356]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001169608.2 PREDICTED: vacuolar protein sorting-associated protein 52 homolog isoform 5 P. troglodytes 100.0 722
NP_072047.4 VPS52 gene product H. sapiens 100.0 722
XP_002803739.1 PREDICTED: vacuolar protein sorting-associated protein 52 homolog M. mulatta 99.9 722
XP_003897486.1 PREDICTED: vacuolar protein sorting-associated protein 52 homolog P. anubis 99.9 722
XP_001925428.2 PREDICTED: vacuolar protein sorting-associated protein 52 homolog S. scrofa 99.9 722
NP_001179989.1 VPS52 gene product B. taurus 99.9 722
XP_001497082.1 PREDICTED: vacuolar protein sorting-associated protein 52 homolog isoform 1 E. caballus 99.7 722
NP_766208.2 Vps52 gene product M. musculus 99.3 722
XP_684689.2 PREDICTED: vacuolar protein sorting-associated protein 52 homolog isoform 2 D. rerio 81.3 684
NP_608931.1 CG7371 D. melanogaster 54.6 649
XP_001696137.1 subunit of GARP complex C. reinhardtii 46.7 240
NP_509282.3 Protein VPS-52 C. elegans 45.4 174
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
NP_001041553.1 vacuolar protein sorting-associated protein 52 homolog C. lupus familiaris 99.5 722
XP_004019219.1 PREDICTED: vacuolar protein sorting-associated protein 52 homolog O. aries 99.3 750

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; skin; thymus; uncharacterized tissue; placenta; uterus; lung; kidney; mammary gland; mouth; intestine; amniotic fluid; stomach; mixed; vascular; connective tissue; trachea; blood; pancreas; embryonic tissue; pharynx; eye; bone marrow; spinal cord; bladder; prostate; ovary; pituitary gland; thyroid; spleen; cervix; liver; larynx; ascites; bone; salivary gland; lymph node; heart; muscle; umbilical cord; lymph
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: Chr 12 G19781
UniSTS entry: Chr 12 RH10585
UniSTS entry: Chr 6 RH12561 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AJ006026.1 Homo sapiens mRNA for ARE1-like protein P
AK001725.1 Homo sapiens cDNA FLJ10863 fis, clone NT2RP4001575, highly similar to Vacuolar protein sorting protein 52 P
AL390171.1 Homo sapiens mRNA; cDNA DKFZp547I194 (from clone DKFZp547I194) PA
AK222867.1 Homo sapiens mRNA for suppressor of actin mutations 2-like isoform a variant, clone: HEP15548 PA
NM_022553.4 Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA PA
BC032108.1 Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae), mRNA (cDNA clone MGC:23328 IMAGE:4644275), complete cds PA
AK093057.1 Homo sapiens cDNA FLJ35738 fis, clone TESTI2003692, highly similar to Rattus norvegicus mRNA for ARE1 protein P
AK300430.1 Homo sapiens cDNA FLJ60156 complete cds, highly similar to Vacuolar protein sorting protein 52 P
AK300308.1 Homo sapiens cDNA FLJ58858 complete cds, highly similar to Vacuolar protein sorting protein 52 P
AK299563.1 Homo sapiens cDNA FLJ55499 complete cds, highly similar to Vacuolar protein sorting protein 52 P
AK297935.1 Homo sapiens cDNA FLJ54452 complete cds, highly similar to Vacuolar protein sorting protein 52 P
AK304080.1 Homo sapiens cDNA FLJ58349 complete cds, highly similar to Vacuolar protein sorting protein 52 P
BC040114.1 Homo sapiens vacuolar protein sorting 52 homolog (S. cerevisiae), mRNA (cDNA clone MGC:48686 IMAGE:5755265), complete cds PA

EST sequences (10 of 682) [Show all sequences]

AA961126.1 Clone IMAGE:1575522 intestine 3' read A
AA972254.1 Clone IMAGE:1584445 lung 3' read A
AA995340.1 Clone IMAGE:1604875 lung 3' read A
AI002409.1 Clone IMAGE:1601964 lung 3' read
AI050679.1 Clone IMAGE:1639961 testis 3' read A
AI187893.1 Clone IMAGE:1738534 testis 3' read A
AI191767.1 Clone IMAGE:1734088 testis 3' read A
CB159005.1 Clone L18POOL1n1-29-C09 liver 5' read P
CB155850.1 Clone B2N807043-12-A05 brain 5' read P
AI274887.1 Clone IMAGE:1873494 intestine 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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