> PDZ and LIM domain 5 (PDLIM5)
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UGID:695470     UniGene Hs.480311     Homo sapiens (human)   PDLIM5 Order cDNA clone, Links
PDZ and LIM domain 5 (PDLIM5)

Human protein-coding gene PDLIM5. Represented by 775 ESTs from 294 cDNA libraries. Corresponds to 10 reference sequences (different isoforms). [UniGene 695470 - Hs.480311]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001243355.1 PDLIM5 gene product H. sapiens 100.0 624
NP_062782.2 Pdlim5 gene product M. musculus 92.0 590
NP_001093351.1 PDZ and LIM domain 5 X. laevis 72.7 581
NP_956490.1 pdlim5b gene product D. rerio 62.1 625
NP_001097331.2 Z band alternatively spliced PDZ-motif protein 52, isoform J D. melanogaster 50.0 180
NP_501534.2 Protein ALP-1, isoform b C. elegans 48.9 179
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
XP_001164521.1 PREDICTED: uncharacterized protein LOC461385 isoform 5 P. troglodytes 99.2 624
XP_001103447.1 PREDICTED: PDZ and LIM domain protein 5-like isoform 5 M. mulatta 97.8 595

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: muscle; brain; heart; placenta; mixed; uterus; embryonic tissue; kidney; prostate; uncharacterized tissue; mammary gland; liver; vascular; skin; eye; bladder; esophagus; umbilical cord; lung; cervix; ear; connective tissue; pancreas; nerve; trachea; stomach; bone; intestine; testis; ovary; bone marrow; mouth; adipose tissue; pharynx; adrenal gland; blood; spleen; lymph node; larynx; thyroid; thymus; ascites; lymph; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4q22
UniSTS entry: Chr 4 SHGC-59267 [Map Viewer]
UniSTS entry: Chr 4 RH91416
UniSTS entry: Chr 4 SHGC-24108
UniSTS entry: Chr 4 SHGC-63475
UniSTS entry: Chr 4 RH91857
UniSTS entry: Chr 4 SHGC-67609
UniSTS entry: Chr 1 L17705
UniSTS entry: Chr 1 D10S2448
UniSTS entry: Chr 1 D15S1477
UniSTS entry: Chr 7 D7S2645
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (30)

AF061258.1 Homo sapiens LIM protein mRNA, complete cds P
BT007328.1 Homo sapiens LIM protein (similar to rat protein kinase C-binding enigma) mRNA, complete cds P
AL049969.1 Homo sapiens mRNA; cDNA DKFZp564A072 (from clone DKFZp564A072) A
BX648059.1 Homo sapiens mRNA; cDNA DKFZp686D08226 (from clone DKFZp686D08226) A
AK129886.1 Homo sapiens cDNA FLJ26376 fis, clone HRT06353
NM_006457.4 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 1, mRNA PA
AY598328.1 Homo sapiens L9 mRNA, complete cds P
NM_001011516.2 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 5, mRNA PA
NM_001011515.2 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 4, mRNA PA
NM_001011513.3 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 2, mRNA PA
AB209531.1 Homo sapiens mRNA for Enigma homolog protein P
AY345240.1 Homo sapiens PDZ and LIM domain 5 (PDLIM5) mRNA, complete cds
BC008741.2 Homo sapiens PDZ and LIM domain 5, mRNA (cDNA clone MGC:2010 IMAGE:3345715), complete cds PA
BC017902.1 Homo sapiens PDZ and LIM domain 5, mRNA (cDNA clone IMAGE:4271274), complete cds PA
AK291898.1 Homo sapiens cDNA FLJ77159 complete cds, highly similar to Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 5, mRNA P
AK291624.1 Homo sapiens cDNA FLJ76869 complete cds, highly similar to Homo sapiens PDZ and LIM domain 5 (PDLIM5), mRNA P
AL833439.1 Homo sapiens mRNA; cDNA DKFZp313G1842 (from clone DKFZp313G1842) PA
AL833438.1 Homo sapiens mRNA; cDNA DKFZp313E0842 (from clone DKFZp313E0842) PA
AL833151.1 Homo sapiens mRNA; cDNA DKFZp313J2240 (from clone DKFZp313J2240) PA
AL832686.1 Homo sapiens mRNA; cDNA DKFZp313C0434 (from clone DKFZp313C0434) PA
AL832157.1 Homo sapiens mRNA; cDNA DKFZp686G1014 (from clone DKFZp686G1014) PA
BC026029.2 Homo sapiens PDZ and LIM domain 5, mRNA (cDNA clone IMAGE:5428538) PA
AK304125.1 Homo sapiens cDNA FLJ61541 complete cds, highly similar to Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 2, mRNA P
AK296980.1 Homo sapiens cDNA FLJ54018 complete cds, highly similar to PDZ and LIM domain protein 5 P
NM_001256428.1 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 8, mRNA PA
NM_001256426.1 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 6, mRNA PA
NM_001256425.1 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 3, mRNA PA
NM_001256429.1 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 9, mRNA A
NM_001256427.1 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 7, mRNA PA
NR_046186.1 Homo sapiens PDZ and LIM domain 5 (PDLIM5), transcript variant 10, non-coding RNA

EST sequences (10 of 775) [Show all sequences]

AA836809.1 Clone IMAGE:1422631 kidney P
AA904632.1 Clone IMAGE:1503882 mixed 3' read
R17931.1 Clone IMAGE:125018 mixed 3' read
AA922628.1 Clone IMAGE:1550576 uncharacterized tissue 3' read A
AI051390.1 Clone IMAGE:1658836 embryonic tissue 3' read A
AI074427.1 Clone IMAGE:1679238 skin 3' read A
AI074624.1 Clone IMAGE:1662672 mixed 3' read A
AI078530.1 Clone IMAGE:1676702 embryonic tissue 3' read A
AI080612.1 Clone IMAGE:1660104 embryonic tissue 3' read A
AI126537.1 Clone IMAGE:1713177 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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