> B-cell CLL/lymphoma 6 (BCL6)
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UGID:693747     UniGene Hs.478588     Homo sapiens (human)   BCL6 Order cDNA clone, Links
B-cell CLL/lymphoma 6 (BCL6)

Human protein-coding gene BCL6. Represented by 393 ESTs from 179 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 693747 - Hs.478588]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001124317.1 BCL6 gene product H. sapiens 100.0 705
XP_001158812.1 PREDICTED: b-cell lymphoma 6 protein isoform 7 P. troglodytes 99.9 705
NP_033874.1 Bcl6 gene product M. musculus 97.2 706
NP_001088538.1 B-cell CLL/lymphoma 6 X. laevis 81.8 693
NP_957028.1 bcl6a gene product D. rerio 78.4 703
NP_001014498.1 CG1832, isoform B D. melanogaster 47.6 147
Other hits (2 of 36) [Show all]SpeciesId(%)Len(aa)
XP_003895307.1 PREDICTED: LOW QUALITY PROTEIN: B-cell lymphoma 6 protein P. anubis 99.4 705
XP_001103774.1 PREDICTED: b-cell lymphoma 6 protein-like isoform 2 M. mulatta 99.3 705

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; mixed; blood; uterus; uncharacterized tissue; mammary gland; amniotic fluid; trachea; pancreas; mouth; placenta; larynx; bladder; kidney; thymus; lung; prostate; lymph node; eye; ovary; muscle; connective tissue; intestine; parathyroid; liver; lymph; heart; adipose tissue; embryonic tissue; stomach; skin; nerve; pituitary gland; cervix; vascular; spleen; bone; adrenal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q27
UniSTS entry: Chr 3 RH70520
UniSTS entry: Chr 3 SHGC-64334
UniSTS entry: Chr 3 STS-W46183
UniSTS entry: Chr 3 SHGC-77610 [Map Viewer]
UniSTS entry: Chr 3 BCL6
UniSTS entry: Chr 3 RH69801 [Map Viewer]
UniSTS entry: Chr 3 SHGC-34056 [Map Viewer]
UniSTS entry: Chr 3 PMC309637P2
UniSTS entry: Chr 3 SHGC-77640 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

NM_001706.4 Homo sapiens B-cell CLL/lymphoma 6 (BCL6), transcript variant 1, mRNA PA
U00115.1 Human zinc-finger protein (bcl-6) mRNA, complete cds PA
BC142705.1 Homo sapiens B-cell CLL/lymphoma 6, mRNA (cDNA clone MGC:165045 IMAGE:40148809), complete cds PA
BC146796.1 Homo sapiens cDNA clone IMAGE:8860299, containing frame-shift errors PA
BC150184.1 Homo sapiens B-cell CLL/lymphoma 6, mRNA (cDNA clone MGC:164962 IMAGE:40148297), complete cds PA
AK308162.1 Homo sapiens cDNA, FLJ98110 P
AL713713.1 Homo sapiens mRNA; cDNA DKFZp667A1115 (from clone DKFZp667A1115) A
AK090890.1 Homo sapiens cDNA FLJ33571 fis, clone BRAMY2010395
AL832990.1 Homo sapiens mRNA; cDNA DKFZp666G163 (from clone DKFZp666G163)
AK304325.1 Homo sapiens cDNA FLJ60220 complete cds, highly similar to B-cell lymphoma 6 protein P
NM_001130845.1 Homo sapiens B-cell CLL/lymphoma 6 (BCL6), transcript variant 2, mRNA PA
EU883531.1 Homo sapiens zinc finger transcription factor BCL6S (BCL6) mRNA, complete cds, alternatively spliced P
NM_001134738.1 Homo sapiens B-cell CLL/lymphoma 6 (BCL6), transcript variant 3, mRNA PA
EU139066.1 Homo sapiens B-cell lymphoma 6 protein transcript variant (BCL6) mRNA, complete cds P
Z21943.1 H.sapiens mRNA for zinc finger protein P

EST sequences (10 of 393) [Show all sequences]

R14390.1 Clone IMAGE:28938 brain 5' read
AA989511.1 Clone IMAGE:1606290 kidney 3' read
AI080223.1 Clone IMAGE:1677375 mixed 3' read A
AI090269.1 Clone IMAGE:1697612 uterus 3' read A
CB049506.1 Clone IMAGE:3271316 prostate 5' read A
CB049505.1 Clone IMAGE:3271316 prostate 3' read A
CB050312.1 Clone IMAGE:3271739 prostate 3' read A
CB050313.1 Clone IMAGE:3271739 prostate 5' read A
BX111046.1 Clone IMAGp998D04269_;_IMAGE:44787 brain P
AI167869.1 Clone IMAGE:1682669 parathyroid 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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