> Coiled-coil domain containing 80 (CCDC80)
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UGID:692287     UniGene Hs.477128     Homo sapiens (human)   CCDC80 Order cDNA clone, Links
Coiled-coil domain containing 80 (CCDC80)

Human protein-coding gene CCDC80. Represented by 713 ESTs from 223 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 692287 - Hs.477128]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_955805.1 CCDC80 gene product H. sapiens 100.0 949
XP_001156251.2 PREDICTED: coiled-coil domain-containing protein 80 isoform 7 P. troglodytes 99.8 949
NP_080715.2 Ccdc80 gene product M. musculus 92.1 948
NP_001007199.1 ccdc80 gene product D. rerio 72.6 790
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001104892.1 PREDICTED: coiled-coil domain-containing protein 80-like isoform 2 M. mulatta 99.0 949
XP_003893972.1 PREDICTED: coiled-coil domain-containing protein 80 isoform 1 P. anubis 98.8 949

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: connective tissue; skin; brain; lung; embryonic tissue; uterus; mixed; bone; prostate; intestine; lymph node; bladder; vascular; eye; uncharacterized tissue; liver; mouth; heart; adipose tissue; pharynx; muscle; testis; placenta; ovary; stomach; mammary gland; kidney; spinal cord; thymus; spleen; adrenal gland; trachea; thyroid; ear; pancreas; nerve; bone marrow; ascites; ganglia; esophagus; cervix; pituitary gland; epididymis; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q13.2
UniSTS entry: Chr 3 D3S3894 [Map Viewer]
UniSTS entry: STS-N24008
UniSTS entry: Chr 3 CCDC80
UniSTS entry: Chr 3 RH102812
UniSTS entry: Chr 3 RH80490
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (24)

BC042128.1 Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone IMAGE:4874518) PA
BX647817.1 Homo sapiens mRNA; cDNA DKFZp686O1752 (from clone DKFZp686O1752) PA
BX647117.1 Homo sapiens mRNA; cDNA DKFZp686O02149 (from clone DKFZp686O02149) PA
AB052098.1 Homo sapiens mRNA for HBE245, complete cds PA
NM_199512.1 Homo sapiens coiled-coil domain containing 80 (CCDC80), transcript variant 2, mRNA PA
NM_199511.1 Homo sapiens coiled-coil domain containing 80 (CCDC80), transcript variant 1, mRNA PA
AY548107.1 Homo sapiens clone 9 DRO1 (DRO1) mRNA, complete cds PA
AY548106.1 Homo sapiens clone 16 DRO1 (DRO1) mRNA, complete cds PA
AY526612.1 Homo sapiens URB mRNA, complete cds PA
BC073164.1 Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone IMAGE:6179924), partial cds PA
AY333429.1 Homo sapiens URB (URB) mRNA, complete cds P
AY726593.1 Homo sapiens clone MO-22 mRNA sequence P
BC086876.1 Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone IMAGE:30707734), partial cds P
BC110842.1 Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone MGC:131805 IMAGE:6205672), complete cds PA
BC116178.1 Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone MGC:134851 IMAGE:40068210), complete cds P
AB266387.1 Homo sapiens mRNA for nuclear envelope protein okuribin, complete cds P
BC116179.1 Homo sapiens cDNA clone IMAGE:40068213, containing frame-shift errors P
AK292881.1 Homo sapiens cDNA FLJ77243 complete cds, highly similar to Homo sapiens steroid sensitive gene 1 (URB), transcript variant 1, mRNA PA
AF506819.1 Homo sapiens URB mRNA, complete cds P
AL833034.1 Homo sapiens mRNA; cDNA DKFZp666L078 (from clone DKFZp666L078) PA
AK304561.1 Homo sapiens cDNA FLJ54405 complete cds, highly similar to Homo sapiens steroid sensitive gene 1 (URB), transcript variant 2, mRNA PA
AK075210.1 Homo sapiens cDNA FLJ90729 fis, clone PLACE1009982, weakly similar to SALIVARY GLUE PROTEIN SGS-3 PRECURSOR P
BC023639.2 Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone IMAGE:4875944), with apparent retained intron PA
BC042105.1 Homo sapiens coiled-coil domain containing 80, mRNA (cDNA clone IMAGE:5164985), complete cds PA

EST sequences (10 of 713) [Show all sequences]

AA971661.1 Clone IMAGE:1583607 mixed 3' read A
AA978105.1 Clone IMAGE:1578513 mixed 3' read A
AA994712.1 Clone IMAGE:1625480 mixed 3' read
AI039656.1 Clone IMAGE:1659969 embryonic tissue 3' read P
AI075349.1 Clone IMAGE:1637859 mammary gland 3' read A
AI079893.1 Clone IMAGE:1659874 embryonic tissue 3' read P
AI082183.1 Clone IMAGE:1662182 mixed 3' read
AI090486.1 Clone IMAGE:1691541 heart 3' read PA
AI092202.1 Clone IMAGE:1691134 heart 3' read A
AI083516.1 Clone IMAGE:1662162 mixed 3' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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