> Collagen, type XXI, alpha 1 (COL21A1)
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UGID:137590     UniGene Hs.47629     Homo sapiens (human)   COL21A1 Order cDNA clone, Links
Collagen, type XXI, alpha 1 (COL21A1)

Human protein-coding gene COL21A1. Represented by 130 ESTs from 67 cDNA libraries. Corresponds to reference sequence NM_030820.3. [UniGene 137590 - Hs.47629]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_110447.2 COL21A1 gene product H. sapiens 100.0 956
XP_001157649.1 PREDICTED: collagen alpha-1(XXI) chain isoform 3 P. troglodytes 99.8 956
NP_001087858.1 collagen alpha-1(XXI) chain precursor X. laevis 72.6 956
XP_002664126.2 PREDICTED: collagen alpha-1(XXI) chain-like D. rerio 65.0 548
NP_001255858.1 Protein COL-135, isoform b C. elegans 47.0 490
NP_723044.1 collagen type IV, isoform A D. melanogaster 46.9 192
NP_034066.2 procollagen, type IX, alpha 3 precursor M. musculus 45.4 480
Other hits (2 of 40) [Show all]SpeciesId(%)Len(aa)
XP_001110086.1 PREDICTED: collagen alpha-1(XXI) chain-like isoform 2 M. mulatta 98.8 958
XP_003897812.1 PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XXI) chain P. anubis 97.6 905

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; brain; heart; placenta; intestine; muscle; uterus; eye; kidney; mixed; pharynx; embryonic tissue; lung; connective tissue; thymus; trachea; mouth; testis; stomach; liver; cervix; ganglia; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p12.3-p11.2|6p12.3-p11.2
UniSTS entry: Chr 6 RH46582
UniSTS entry: Chr 6 SHGC-58459
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BC045597.1 Homo sapiens collagen, type XXI, alpha 1, mRNA (cDNA clone MGC:26619 IMAGE:4814199), complete cds PA
AK126586.1 Homo sapiens cDNA FLJ44623 fis, clone BRACE2017397, weakly similar to Cartilage matrix protein precursor P
AF370383.1 Homo sapiens FP633 mRNA, complete cds PA
AL136624.1 Homo sapiens mRNA; cDNA DKFZp564B052 (from clone DKFZp564B052) PA
BC126108.1 Homo sapiens collagen, type XXI, alpha 1, mRNA (cDNA clone MGC:161386 IMAGE:8991824), complete cds P
NM_030820.3 Homo sapiens collagen, type XXI, alpha 1 (COL21A1), mRNA PA
AF414088.1 Homo sapiens collagen XXI (COL21A1) mRNA, complete cds PA
AF330693.1 Homo sapiens alpha 1 chain-like collagen COLA1L precursor (COLA1L) mRNA, complete cds PA
AK313398.1 Homo sapiens cDNA, FLJ93933, highly similar to Homo sapiens collagen, type XXI, alpha 1 (COL21A1), mRNA P
AK096444.1 Homo sapiens cDNA FLJ39125 fis, clone NTONG2007034, highly similar to Homo sapiens collagen, type XXI, alpha 1 (COL21A1), mRNA P
BC143865.1 Homo sapiens collagen, type XXI, alpha 1, mRNA (cDNA clone MGC:177398 IMAGE:9052381), complete cds P
BC143864.1 Homo sapiens cDNA clone IMAGE:9052380 P
BC143862.1 Homo sapiens cDNA clone IMAGE:9052378 P
BC143863.1 Homo sapiens cDNA clone IMAGE:9052379 P

EST sequences (10 of 130) [Show all sequences]

AI127272.1 Clone IMAGE:1705456 heart 3' read PA
AI130837.1 Clone IMAGE:1709155 heart 3' read A
AI131248.1 Clone IMAGE:1709774 heart 3' read A
BX099466.1 Clone IMAGp998F20825 heart 3' read A
AI189094.1 Clone IMAGE:1724077 placenta 3' read
AI194020.1 Clone IMAGE:1745411 lung 3' read A
CB134615.1 Clone L14ChoiCK0-13-H05 liver 5' read
AI434106.1 Clone IMAGE:2132061 stomach 3' read PA
AI580819.1 Clone IMAGE:2043729 embryonic tissue 3' read A
CB241974.1 Clone UI-CF-FN0-aga-o-08-0-UI lung 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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