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SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (SMARCC1)
Human protein-coding gene SMARCC1. Represented by 640 ESTs from 281 cDNA libraries. Corresponds to reference sequence NM_003074.3. [UniGene 691338 - Hs.476179]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
|
SMARCC1 gene product |
H. sapiens |
100.0 |
1104 |
|
|
PREDICTED: SWI/SNF complex subunit SMARCC1 isoform 5 |
P. troglodytes |
99.9 |
1104 |
|
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Smarcc1 gene product |
M. musculus |
97.6 |
1102 |
|
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 |
X. laevis |
86.0 |
1076 |
|
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PREDICTED: SWI/SNF complex subunit SMARCC1 |
D. rerio |
81.3 |
1087 |
|
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Phasmid Socket Absent family member (psa-1) |
C. elegans |
65.2 |
442 |
|
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hypothetical protein NCU08003 |
N. crassa |
64.1 |
220 |
|
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moira, isoform B |
D. melanogaster |
61.5 |
1134 |
|
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Rsc8p |
S. cerevisiae |
54.5 |
156 |
| Other hits (2 of 42) [Show all] | Species | Id(%) | Len(aa) |
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PREDICTED: SWI/SNF complex subunit SMARCC1-like, partial |
P. anubis |
99.4 |
785 |
|
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PREDICTED: SWI/SNF complex subunit SMARCC1 |
E. caballus |
98.7 |
995 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
embryonic tissue; testis; uncharacterized tissue; brain; uterus; mixed; lung; mammary gland; placenta; lymph node; larynx; prostate; bone marrow; mouth; eye; intestine; bladder; skin; kidney; liver; connective tissue; pharynx; muscle; vascular; blood; pancreas; bone; trachea; ascites; ovary; heart; cervix; lymph; thyroid; salivary gland; thymus; adrenal gland; stomach; amniotic fluid; nerve; adipose tissue |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (13)
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BC050564.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone MGC:57743 IMAGE:3912713), complete cds |
PA |
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NM_003074.3 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (SMARCC1), mRNA |
PA |
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BC065253.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:6139607), partial cds |
PA |
|
BC117213.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone MGC:150822 IMAGE:40125764), complete cds |
P |
|
BC113465.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone MGC:142025 IMAGE:8322517), complete cds |
P |
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AK302541.1 |
Homo sapiens cDNA FLJ57671 complete cds, highly similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 |
P |
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AK302412.1 |
Homo sapiens cDNA FLJ57669 complete cds, highly similar to SWI/SNF-related matrix-associatedactin-dependent regulator of chromatin subfamily C member 1 |
P |
|
U66615.1 |
Human SWI/SNF complex 155 KDa subunit (BAF155) mRNA, complete cds |
P |
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BC032564.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:5580002), partial cds |
PA |
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BC021862.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:5138577), partial cds |
PA |
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BC012101.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:4648549), with apparent retained intron |
PA |
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BC039843.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:4508075), partial cds |
PA |
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BC040242.1 |
Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:3450751) |
PA |
EST sequences (10 of 640) [Show all sequences]
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AA972925.1 |
Clone IMAGE:1578961 |
mixed |
3' read |
A |
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AA987830.1 |
Clone IMAGE:1593932 |
kidney |
3' read |
A |
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AI003177.1 |
Clone IMAGE:1699636 |
kidney |
3' read |
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R19916.1 |
Clone IMAGE:34823 |
brain |
5' read |
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AI075870.1 |
Clone IMAGE:1676360 |
embryonic tissue |
3' read |
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AI088039.1 |
Clone IMAGE:1651264 |
mixed |
3' read |
A |
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AI093415.1 |
Clone IMAGE:1695221 |
uterus |
3' read |
P |
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AI093590.1 |
Clone IMAGE:1696377 |
uterus |
3' read |
A |
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AA887081.1 |
Clone IMAGE:1476399 |
uncharacterized tissue |
3' read |
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AI123071.1 |
Clone IMAGE:1510005 |
mixed |
3' read |
A |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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