> SET domain and mariner transposase fusion gene (SETMAR)
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UGID:690459     UniGene Hs.475300     Homo sapiens (human)   SETMAR Order cDNA clone, Links
SET domain and mariner transposase fusion gene (SETMAR)

Human protein-coding gene SETMAR. Represented by 113 ESTs from 75 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 690459 - Hs.475300]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_006506.3 SETMAR gene product H. sapiens 100.0 683
XP_526121.2 PREDICTED: histone-lysine N-methyltransferase SETMAR P. troglodytes 99.7 683
NP_848478.2 Setmar gene product M. musculus 86.7 294
NP_001107072.1 setmar gene product D. rerio 50.9 285
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_003894213.1 PREDICTED: histone-lysine N-methyltransferase SETMAR P. anubis 99.1 683
XP_001099426.2 PREDICTED: histone-lysine N-methyltransferase SETMAR M. mulatta 99.0 683

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; liver; uterus; heart; umbilical cord; kidney; pancreas; lung; uncharacterized tissue; mixed; intestine; adrenal gland; connective tissue; vascular; ovary; placenta; pharynx; esophagus; testis; embryonic tissue; mouth; prostate; thyroid; eye; skin; ascites; muscle
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3p26.1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AK122967.1 Homo sapiens cDNA FLJ16706 fis, clone UTERU2001504, highly similar to Homo sapiens SET domain and mariner transposase fusion gene (SETMAR)
NM_006515.3 Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), transcript variant 1, mRNA PA
AK222734.1 Homo sapiens mRNA for SET domain and mariner transposase fusion gene variant, clone: DMC03654 PA
AY952295.1 Homo sapiens metnase mRNA, complete cds P
BC008931.2 Homo sapiens SET domain and mariner transposase fusion gene, mRNA (cDNA clone IMAGE:2819917), partial cds PA
BC011635.2 Homo sapiens SET domain and mariner transposase fusion gene, mRNA (cDNA clone MGC:12780 IMAGE:4080032), complete cds PA
AK311418.1 Homo sapiens cDNA, FLJ18460 P
AK307537.1 Homo sapiens cDNA, FLJ97485 PA
AK297865.1 Homo sapiens cDNA FLJ54643 complete cds, highly similar to Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), mRNA PA
AK302296.1 Homo sapiens cDNA FLJ51146 complete cds, highly similar to Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), mRNA PA
NM_001243723.1 Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), transcript variant 2, mRNA PA
NR_024022.1 Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), transcript variant 3, non-coding RNA PA
NR_075073.1 Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), transcript variant 5, non-coding RNA A
NM_001276325.1 Homo sapiens SET domain and mariner transposase fusion gene (SETMAR), transcript variant 4, mRNA A
U80776.1 Human EST clone NIB1543 mariner transposon Hsmar1 orf gene, complete cds P
AF054989.1 Homo sapiens clone 23658 unknown mRNA, complete cds PA

EST sequences (10 of 113) [Show all sequences]

AA972798.1 Clone IMAGE:1578125 mixed 3' read A
BX388110.2 Clone CS0DL002YE20 uncharacterized tissue 5' read P
BX451998.2 Clone CS0DF011YL04 brain 5' read P
BX451999.2 Clone CS0DF011YL04 brain 5' read P
BX460192.2 Clone CS0DF011YL04 brain 5' read P
BX454942.2 Clone CS0DF011YL04 brain 3' read A
CD696799.1 pharynx
CF141437.1 Clone IMAGE:3099806 prostate 5' read P
AW160952.1 Clone IMAGE:2782285 brain 5' read P
AW162556.1 Clone IMAGE:2782285 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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