> Hermansky-Pudlak syndrome 4 (HPS4)
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UGID:689595     UniGene Hs.474436     Homo sapiens (human)   HPS4 Order cDNA clone, Links
Hermansky-Pudlak syndrome 4 (HPS4)

Human protein-coding gene HPS4. Represented by 376 ESTs from 172 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 689595 - Hs.474436]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_071364.4 HPS4 gene product H. sapiens 100.0 707
NP_619587.3 Hps4 gene product M. musculus 73.9 670
NP_001088600.1 Hermansky-Pudlak syndrome 4 X. laevis 62.9 619
NP_956620.1 hps4 gene product D. rerio 55.5 632
Other hits (2 of 18) [Show all]SpeciesId(%)Len(aa)
XP_001172017.1 PREDICTED: Hermansky-Pudlak syndrome 4 protein isoform 8 P. troglodytes 98.9 707
XP_001099509.1 PREDICTED: hermansky-Pudlak syndrome 4 protein isoform 1 M. mulatta 96.3 707

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; spleen; mixed; lymph node; amniotic fluid; adrenal gland; ovary; uncharacterized tissue; thymus; heart; skin; pancreas; eye; lymph; lung; mouth; embryonic tissue; thyroid; mammary gland; pharynx; uterus; liver; intestine; placenta; trachea; connective tissue; kidney; stomach; blood; pituitary gland; larynx; bone marrow; umbilical cord; bone; prostate; ganglia; cervix
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 22
Map position: 22cen-q12.3
UniSTS entry: Chr 22 G20318
UniSTS entry: Chr 22 NIB1482 [Map Viewer]
UniSTS entry: Chr 22 WI-14276 [Map Viewer]
UniSTS entry: Chr 22 RH11272
UniSTS entry: Chr 22 D22S300
UniSTS entry: Chr 22 HPS4__6584
UniSTS entry: Chr 22 A005L38 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

BC050285.1 Homo sapiens Hermansky-Pudlak syndrome 4, mRNA (cDNA clone IMAGE:5271351) PA
AK123691.1 Homo sapiens cDNA FLJ41697 fis, clone HCHON2002354 P
BC065030.1 Homo sapiens Hermansky-Pudlak syndrome 4, mRNA (cDNA clone MGC:70469 IMAGE:6148557), complete cds PA
CR456392.1 Homo sapiens bK1048E9.4 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.bK1048E9.4) P
AL365512.1 Novel human gene mapping to chomosome 22 P
NM_022081.5 Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 1, mRNA PA
AK057648.1 Homo sapiens cDNA FLJ33086 fis, clone TRACH2000461 P
AK054717.1 Homo sapiens cDNA FLJ30155 fis, clone BRACE2000421 P
AK290211.1 Homo sapiens cDNA FLJ77277 complete cds, highly similar to Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 1, mRNA P
AY043416.1 Homo sapiens LE protein mRNA, complete cds P
AL713795.1 Homo sapiens mRNA; cDNA DKFZp434C2120 (from clone DKFZp434C2120) PA
AK097529.1 Homo sapiens cDNA FLJ40210 fis, clone TESTI2021038
AK095406.1 Homo sapiens cDNA FLJ38087 fis, clone CTONG2018739, highly similar to Hermansky-Pudlak syndrome 4 protein P
BC028625.1 Homo sapiens cDNA clone IMAGE:4826436 PA
NM_152841.2 Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 2, mRNA PA
BC035614.1 Homo sapiens Hermansky-Pudlak syndrome 4, mRNA (cDNA clone IMAGE:4508231), with apparent retained intron PA
NR_073135.1 Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 5, non-coding RNA PA
NR_073136.1 Homo sapiens Hermansky-Pudlak syndrome 4 (HPS4), transcript variant 6, non-coding RNA PA

EST sequences (10 of 376) [Show all sequences]

AA926860.1 Clone IMAGE:1486540 mouth 3' read
AI022766.1 Clone IMAGE:1654927 mixed 3' read A
AI052619.1 Clone IMAGE:1674924 mixed 3' read A
AI076395.1 Clone IMAGE:1674811 mixed 3' read
R21567.1 Clone IMAGE:31393 brain 5' read P
BX108547.1 Clone IMAGp998I20190_;_IMAGE:134491 placenta A
BX109165.1 Clone IMAGp998N083165_;_IMAGE:1257799 uncharacterized tissue
R27707.1 Clone IMAGE:134491 placenta 5' read
R27708.1 Clone IMAGE:134491 placenta 3' read A
AI204278.1 Clone IMAGE:1754207 testis 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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