> Collagen, type VI, alpha 1 (COL6A1)
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UGID:689212     UniGene Hs.474053     Homo sapiens (human)   COL6A1 Order cDNA clone, Links
Collagen, type VI, alpha 1 (COL6A1)

Human protein-coding gene COL6A1. Represented by 1153 ESTs from 345 cDNA libraries. Corresponds to reference sequence NM_001848.2. [UniGene 689212 - Hs.474053]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001839.2 COL6A1 gene product H. sapiens 100.0 1027
XP_001158445.1 PREDICTED: collagen alpha-1(VI) chain isoform 2 P. troglodytes 99.6 1027
NP_034063.1 Col6a1 gene product M. musculus 93.4 1024
NP_001080437.1 collagen alpha-1(VI) chain precursor X. laevis 72.5 1017
XP_698253.2 PREDICTED: collagen alpha-1(VI) chain D. rerio 62.1 986
NP_001255858.1 Protein COL-135, isoform b C. elegans 47.7 491
NP_001189235.1 CG42342, isoform I D. melanogaster 45.5 391
Other hits (2 of 45) [Show all]SpeciesId(%)Len(aa)
XP_003895409.1 PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(VI) chain P. anubis 99.2 1027
XP_001118050.2 PREDICTED: hypothetical protein LOC721855 M. mulatta 98.2 1024

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; lung; bone; brain; heart; uterus; skin; uncharacterized tissue; placenta; mixed; intestine; connective tissue; mammary gland; eye; pancreas; ovary; prostate; kidney; cervix; bladder; liver; nerve; mouth; testis; umbilical cord; bone marrow; vascular; esophagus; stomach; muscle; amniotic fluid; ear; trachea; epididymis; spleen; larynx; thyroid; salivary gland; adrenal gland; thymus; pituitary gland; blood; ganglia; parathyroid; adipose tissue; ascites; pharynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 21
Map position: 21q22.3
UniSTS entry: Chr 21 RH75955
UniSTS entry: Chr 1 MARC_4179-4180:991938416:1
UniSTS entry: D22S1547
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BC052575.1 Homo sapiens collagen, type VI, alpha 1, mRNA (cDNA clone MGC:59702 IMAGE:6598940), complete cds PA
BC005159.2 Homo sapiens collagen, type VI, alpha 1, mRNA (cDNA clone IMAGE:3506644), partial cds PA
NM_001848.2 Homo sapiens collagen, type VI, alpha 1 (COL6A1), mRNA PA
BC022236.1 Homo sapiens, clone IMAGE:4178997, mRNA, partial cds PA
AK307989.1 Homo sapiens cDNA, FLJ97937 P
AK299396.1 Homo sapiens cDNA FLJ61362 complete cds, highly similar to Collagen alpha-1(VI) chain precursor PA
AK298968.1 Homo sapiens cDNA FLJ58994 complete cds, highly similar to Collagen alpha-1(VI) chain precursor P
BC032821.1 Homo sapiens collagen, type VI, alpha 1, mRNA (cDNA clone IMAGE:5217429), partial cds P
X15879.1 Human mRNA for collagen VI alpha-1 N-terminal globular domain P
X06194.1 Human mRNA for collagen alpha 1 (VI) chain 5' region
M27447.1 Human alpha-1 type VI collagen (COL6A1) mRNA, partial cds
M20776.1 Homo sapiens, alpha-1 (VI) collagen P
X15880.1 Human mRNA for collagen VI alpha-1 C-terminal globular domain P

EST sequences (10 of 1153) [Show all sequences]

AA987636.1 Clone IMAGE:1603411 lung 3' read A
AA996086.1 Clone IMAGE:1607173 mammary gland 3' read P
AI002233.1 Clone IMAGE:1601396 lung 3' read A
AI015192.1 Clone IMAGE:1623314 embryonic tissue 3' read P
AI018284.1 Clone IMAGE:1626801 mixed 3' read P
AI032122.1 Clone IMAGE:1611251 uncharacterized tissue 3' read
AI038798.1 Clone IMAGE:1664156 skin 3' read P
AI038879.1 Clone IMAGE:1663049 skin 3' read P
AI039728.1 Clone IMAGE:1658174 embryonic tissue 3' read A
AI042555.1 Clone IMAGE:1665078 skin 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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