> OTU domain, ubiquitin aldehyde binding 1 (OTUB1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:688947     UniGene Hs.473788     Homo sapiens (human)   OTUB1 Order cDNA clone, Links
OTU domain, ubiquitin aldehyde binding 1 (OTUB1)

Human protein-coding gene OTUB1. Represented by 1118 ESTs from 366 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 688947 - Hs.473788]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003313090.1 PREDICTED: ubiquitin thioesterase OTUB1 P. troglodytes 100.0 307
NP_598911.1 ubiquitin thioesterase OTUB1 M. musculus 100.0 270
NP_001099802.1 Otub1 gene product R. norvegicus 100.0 270
XP_003909684.1 PREDICTED: ubiquitin thioesterase OTUB1 P. anubis 100.0 270
NP_060140.2 OTUB1 gene product H. sapiens 100.0 270
NP_001238876.1 ubiquitin thioesterase OTUB1 C. lupus familiaris 100.0 270
NP_001155875.1 OTUB1 gene product S. scrofa 100.0 270
XP_001115486.1 PREDICTED: ubiquitin thioesterase OTUB1 M. mulatta 100.0 264
NP_001029891.1 OTUB1 gene product B. taurus 99.6 270
XP_004019687.1 PREDICTED: ubiquitin thioesterase OTUB1 O. aries 99.6 240
NP_001002411.1 otub1a gene product D. rerio 85.8 266
NP_001089759.1 OTU domain, ubiquitin aldehyde binding 1 X. laevis 81.0 267
NP_609375.1 CG4968 D. melanogaster 62.1 250
Other hits (2 of 33) [Show all]SpeciesId(%)Len(aa)
XP_001489344.1 PREDICTED: ubiquitin thioesterase OTUB1-like E. caballus 99.3 279
XP_003228011.1 PREDICTED: LOW QUALITY PROTEIN: ubiquitin thioesterase OTUB1-like, partial A. carolinensis 91.9 247

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; embryonic tissue; intestine; lung; placenta; testis; mixed; uterus; kidney; skin; eye; mammary gland; spleen; mouth; liver; bone marrow; salivary gland; cervix; lymph; ascites; stomach; blood; ovary; esophagus; thymus; prostate; pancreas; heart; bladder; muscle; connective tissue; tonsil; bone; pharynx; thyroid; vascular; amniotic fluid; ganglia; nerve; umbilical cord; lymph node; adrenal gland; pituitary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q13.1
UniSTS entry: Chr 11 RH78815
UniSTS entry: Chr 11 SHGC-30562
UniSTS entry: Chr 11 RH102958
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AY177200.1 Homo sapiens ubiquitin-specific protease otubain 1 mRNA, complete cds P
AL096714.1 Homo sapiens mRNA; cDNA DKFZp564E242 (from clone DKFZp564E242) PA
AK000120.1 Homo sapiens cDNA FLJ20113 fis, clone COL05437 PA
NM_017670.2 Homo sapiens OTU domain, ubiquitin aldehyde binding 1 (OTUB1), transcript variant 1, mRNA PA
BC107701.1 Homo sapiens OTU domain, ubiquitin aldehyde binding 1, mRNA (cDNA clone MGC:111158 IMAGE:6494629), complete cds PA
NR_003089.1 Homo sapiens OTU domain, ubiquitin aldehyde binding 1 (OTUB1), transcript variant 2, non-coding RNA PA
AK225133.1 Homo sapiens mRNA for Ubiquitin thiolesterase protein OTUB1 variant, clone: CBL02692 P
BC007519.2 Homo sapiens OTU domain, ubiquitin aldehyde binding 1, mRNA (cDNA clone MGC:4584 IMAGE:3051266), complete cds PA
BC010368.1 Homo sapiens OTU domain, ubiquitin aldehyde binding 1, mRNA (cDNA clone MGC:13444 IMAGE:4334279), complete cds PA
AK307413.1 Homo sapiens cDNA, FLJ97361 P
AK098029.1 Homo sapiens cDNA FLJ40710 fis, clone THYMU2027125, highly similar to Ubiquitin thioesterase protein OTUB1 (EC 3.4.-.-) P
AK298287.1 Homo sapiens cDNA FLJ56307 complete cds, highly similar to Ubiquitin thioesterase protein OTUB1 (EC 3.4.-.-) PA
AK303228.1 Homo sapiens cDNA FLJ61195 complete cds, highly similar to Ubiquitin thioesterase protein OTUB1 (EC 3.4.-.-) P
AF161381.1 Homo sapiens HSPC263 mRNA, partial cds PA

EST sequences (10 of 1118) [Show all sequences]

AA968853.1 Clone IMAGE:1573811 kidney 3' read A
AA987713.1 Clone IMAGE:1593417 kidney 3' read A
R16295.1 Clone IMAGE:30089 brain 5' read P
AA946762.1 Clone IMAGE:1589778 kidney 3' read A
AI124016.1 Clone IMAGE:1691472 heart 3' read A
R22844.1 Clone IMAGE:35776 brain 5' read
AI160737.1 Clone IMAGE:1703430 brain 3' read A
BX099050.1 Clone IMAGp998M23326_;_IMAGE:177982 brain P
AI262509.1 Clone IMAGE:1871553 intestine 3' read A
AI262840.1 Clone IMAGE:1871039 intestine 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help