> SAM domain, SH3 domain and nuclear localization signals 1 (SAMSN1)
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UGID:688500     UniGene Hs.473341     Homo sapiens (human)   SAMSN1 Order cDNA clone, Links
SAM domain, SH3 domain and nuclear localization signals 1 (SAMSN1)

Human protein-coding gene SAMSN1. Represented by 108 ESTs from 67 cDNA libraries. EST representation biased toward neonate. Corresponds to 2 reference sequences (different isoforms). [UniGene 688500 - Hs.473341]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001243299.1 SAMSN1 gene product H. sapiens 100.0 440
NP_075869.2 SAM domain-containing protein SAMSN-1 M. musculus 90.3 371
NP_001006039.1 samsn1b gene product D. rerio 61.2 345
NP_001092177.1 SAM and SH3 domain containing 3 X. laevis 57.5 360
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_001154786.1 PREDICTED: SAM domain-containing protein SAMSN-1 isoform 4 P. troglodytes 98.9 440
XP_003895666.1 PREDICTED: SAM domain-containing protein SAMSN-1 isoform 2 P. anubis 98.2 440

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: neonate [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: blood; uncharacterized tissue; bone marrow; uterus; mixed; pharynx; liver; kidney; heart; lymph node; eye; placenta; muscle; brain; adrenal gland; esophagus; lymph; trachea; thymus; salivary gland; lung; vascular; testis; ear; stomach; connective tissue; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 21
Map position: 21q11
UniSTS entry: Chr 21 RH103104
UniSTS entry: Chr 21 RH45314
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK125144.1 Homo sapiens cDNA FLJ43154 fis, clone D3OST3000169, highly similar to SAM domain-containing protein SAMSN-1 P
AF222927.1 Homo sapiens SAMSN1 (SAMSN1) mRNA, complete cds P
NM_022136.4 Homo sapiens SAM domain, SH3 domain and nuclear localization signals 1 (SAMSN1), transcript variant 1, mRNA PA
AF218085.2 Homo sapiens SH3-SAM adaptor protein (HACS1) mRNA, complete cds PA
BC029112.1 Homo sapiens SAM domain, SH3 domain and nuclear localization signals 1, mRNA (cDNA clone MGC:16947 IMAGE:4343284), complete cds PA
AF519621.1 Homo sapiens SAMSN1 variant b (SAMSN1) mRNA, complete cds; alternatively spliced P
BC020638.1 Homo sapiens, Similar to SAM domain, SH3 domain and nuclear localisation signals, 1, clone IMAGE:4696730, mRNA A
NM_001256370.1 Homo sapiens SAM domain, SH3 domain and nuclear localization signals 1 (SAMSN1), transcript variant 2, mRNA PA

EST sequences (10 of 108) [Show all sequences]

AI000065.1 Clone IMAGE:1608774 mammary gland 3' read
AI223999.1 Clone IMAGE:2001183 lymph node 3' read A
R33401.1 Clone IMAGE:136169 placenta 5' read
AI357169.1 Clone IMAGE:2001588 lymph node 3' read
AI371399.1 Clone IMAGE:1915204 kidney 3' read A
AI635436.1 Clone IMAGE:2232816 kidney 3' read A
AI719970.1 Clone IMAGE:2320393 vascular 3' read
AI823872.1 Clone IMAGE:2404136 kidney 3' read A
AI640500.1 Clone IMAGE:2299358 kidney 3' read P
CB958348.1 Clone IMAGE:30353344 mixed 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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