> Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (RAPH1)
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UGID:686321     UniGene Hs.471162     Homo sapiens (human)   RAPH1 Links
Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (RAPH1)

Human protein-coding gene RAPH1. Represented by 232 ESTs from 135 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 686321 - Hs.471162]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_998754.1 RAPH1 gene product H. sapiens 100.0 1249
XP_516044.3 PREDICTED: ras-associated and pleckstrin homology domains-containing protein 1 isoform 4 P. troglodytes 99.8 1249
NP_001038978.3 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 M. musculus 95.0 1265
XP_685598.3 PREDICTED: ras-associated and pleckstrin homology domains-containing protein 1 D. rerio 70.6 1320
NP_001087106.2 amyloid beta A4 precursor protein-binding family B member 1-interacting protein X. laevis 60.5 488
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_003907886.1 PREDICTED: ras-associated and pleckstrin homology domains-containing protein 1 P. anubis 99.0 1250
XP_002808066.1 PREDICTED: LOW QUALITY PROTEIN: ras-associated and pleckstrin homology domains-containing protein 1-like M. mulatta 98.3 1238

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; brain; lung; liver; skin; uncharacterized tissue; bone marrow; embryonic tissue; ear; kidney; stomach; testis; pancreas; eye; muscle; intestine; prostate; mammary gland; thyroid; mouth; connective tissue; nerve; bladder; spinal cord; ascites; uterus; placenta; bone; epididymis; lymph node; heart; larynx; cervix
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q33
UniSTS entry: Chr 2 RH68933 [Map Viewer]
UniSTS entry: Chr 2 SHGC-30548
UniSTS entry: Chr 2 SHGC-32154 [Map Viewer]
UniSTS entry: Chr 2 RH103294
UniSTS entry: Chr 2 RH45563
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AJ584699.1 Homo sapiens mRNA for RAPH1 protein P
AY523978.1 Homo sapiens truncated RMO1c splice variant mRNA, complete cds, alternatively spliced P
AY523977.1 Homo sapiens RMO1 mRNA, complete cds, alternatively spliced P
NM_203365.2 Homo sapiens Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (RAPH1), transcript variant 3, mRNA PA
NM_213589.1 Homo sapiens Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 (RAPH1), transcript variant 1, mRNA PA
AY494951.1 Homo sapiens lamellipodin (LPD) mRNA, complete cds P
AK022729.1 Homo sapiens cDNA FLJ12667 fis, clone NT2RM4002281
AB051468.1 Homo sapiens mRNA for KIAA1681 protein, partial cds P
AB053320.1 Homo sapiens ALS2CR18 mRNA
AB053311.1 Homo sapiens ALS2CR9 mRNA, complete cds P
AK096270.1 Homo sapiens cDNA FLJ38951 fis, clone NT2NE2018739 P
AK095976.1 Homo sapiens cDNA FLJ38657 fis, clone HHDPC2009528 P
AF086189.1 Homo sapiens full length insert cDNA clone ZC31E06 A

EST sequences (10 of 232) [Show all sequences]

AA903009.1 Clone IMAGE:1516915 uncharacterized tissue 3' read A
AA903180.1 Clone IMAGE:1517161 uncharacterized tissue 3' read A
AA972060.1 Clone IMAGE:1583958 mixed 3' read
AA987614.1 Clone IMAGE:1603387 lung 3' read
AI033234.1 Clone IMAGE:1654870 mixed 3' read
AI073358.1 Clone IMAGE:1679377 skin 3' read A
AI128240.1 Clone IMAGE:1711435 uterus 3' read A
CB051201.1 Clone IMAGE:3289583 prostate 3' read A
CB051202.1 Clone IMAGE:3289583 prostate 5' read
T06495.1 Clone HFBDU23 brain


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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