> Ornithine decarboxylase 1 (ODC1)
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UGID:682860     UniGene Hs.467701     Homo sapiens (human)   ODC1 Order cDNA clone, Links
Ornithine decarboxylase 1 (ODC1)

Human protein-coding gene ODC1. Represented by 1200 ESTs from 366 cDNA libraries. Corresponds to reference sequence NM_002539.1. [UniGene 682860 - Hs.467701]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_002530.1 ODC1 gene product H. sapiens 100.0 460
XP_001157039.1 PREDICTED: ornithine decarboxylase isoform 5 P. troglodytes 99.8 460
NP_038642.2 ornithine decarboxylase M. musculus 95.0 460
NP_001080167.1 ornithine decarboxylase 1 X. laevis 88.0 459
NP_571876.1 odc1 gene product D. rerio 84.2 457
XP_960749.1 ornithine decarboxylase N. crassa 54.4 414
NP_504752.1 Protein ODC-1 C. elegans 51.5 396
NP_012737.1 ornithine decarboxylase SPE1 S. cerevisiae 50.3 392
XP_001698872.1 ornithine decarboxylase 2 C. reinhardtii 50.1 397
NP_477052.2 ornithine decarboxylase 1 D. melanogaster 49.2 360
Other hits (2 of 59) [Show all]SpeciesId(%)Len(aa)
XP_003908319.1 PREDICTED: ornithine decarboxylase isoform 1 P. anubis 99.3 460
XP_001086596.1 PREDICTED: ornithine decarboxylase isoform 4 M. mulatta 99.1 460

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; lung; prostate; placenta; uncharacterized tissue; embryonic tissue; intestine; eye; skin; pancreas; uterus; lymph; liver; epididymis; trachea; bladder; parathyroid; ascites; mixed; stomach; bone; larynx; mammary gland; esophagus; muscle; ovary; connective tissue; pharynx; cervix; heart; thyroid; kidney; blood; tonsil; spleen; ganglia; adrenal gland; vascular; lymph node; umbilical cord; adipose tissue; mouth; pituitary gland; amniotic fluid; nerve; bone marrow; salivary gland; thymus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2p25
UniSTS entry: Chr 2 G07092
UniSTS entry: Chr 2 RH11814
UniSTS entry: Chr 2 RH91096
UniSTS entry: Chr 2 GDB:181255
UniSTS entry: Chr 2 RH70838 [Map Viewer]
UniSTS entry: Chr 2 ODC1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

NM_002539.1 Homo sapiens ornithine decarboxylase 1 (ODC1), mRNA P
M16650.2 Homo sapiens ornithine decarboxylase (ODC1) mRNA, complete cds P
DQ185043.1 Homo sapiens ornithine decarboxylase 1 mRNA, partial cds P
AK292352.1 Homo sapiens cDNA FLJ78294 complete cds, highly similar to Homo sapiens ornithine decarboxylase 1 (ODC1), mRNA P
AK312766.1 Homo sapiens cDNA, FLJ93177, Homo sapiens ornithine decarboxylase 1 (ODC1), mRNA P
BC025296.1 Homo sapiens ornithine decarboxylase 1, mRNA (cDNA clone MGC:39254 IMAGE:5088190), complete cds PA
AK301956.1 Homo sapiens cDNA FLJ51371 complete cds, highly similar to Ornithine decarboxylase (EC 4.1.1.17) PA
BC014562.2 Homo sapiens cDNA clone IMAGE:3505599, containing frame-shift errors PA
D28365.1 Homo sapiens mRNA for ornithine decarboxylase, 5'UTR region
M20372.1 Human ornithine decarboxylase (ODC) mRNA, 3' end P
X55362.1 Human odc1 mRNA for ornithine decarboxylase PA

EST sequences (10 of 1200) [Show all sequences]

AA973275.1 Clone IMAGE:1536915 kidney 3' read
AI049585.1 Clone IMAGE:1700547 kidney 3' read
AI061312.1 Clone IMAGE:1700410 kidney 3' read A
AA947504.1 Clone IMAGE:1590100 kidney 3' read
AI128342.1 Clone IMAGE:1714640 placenta 3' read A
AI147630.1 Clone IMAGE:1696994 uterus 3' read
AI150181.1 Clone IMAGE:1751922 testis 3' read
AI160818.1 Clone IMAGE:1715489 placenta 3' read A
AI168015.1 Clone IMAGE:1682814 parathyroid 3' read A
BX102875.1 Clone IMAGp998D12672_;_IMAGE:300251 lung P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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