|
Smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG9)
Human protein-coding gene SMG9. Represented by 386 ESTs from 171 cDNA libraries. Corresponds to reference sequence NM_019108.2. [UniGene 682034 - Hs.466875]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
|
SMG9 gene product |
P. troglodytes |
100.0 |
519 |
|
|
SMG9 gene product |
H. sapiens |
100.0 |
519 |
|
|
PREDICTED: protein SMG9-like isoform 2 |
M. mulatta |
99.8 |
519 |
|
|
PREDICTED: protein SMG9 |
P. anubis |
99.8 |
519 |
|
|
Smg9 gene product |
M. musculus |
98.7 |
519 |
|
|
protein SMG9 |
X. laevis |
83.1 |
507 |
|
|
PREDICTED: protein SMG9 isoform 1 |
D. rerio |
78.4 |
504 |
| Other hits (2 of 20) [Show all] | Species | Id(%) | Len(aa) |
|
|
PREDICTED: protein SMG9 |
C. lupus familiaris |
99.4 |
519 |
|
|
PREDICTED: protein SMG9-like |
S. scrofa |
99.0 |
522 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
|
EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
|
GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
|
cDNA Sources: |
testis; brain; uncharacterized tissue; embryonic tissue; ovary; placenta; skin; mouth; cervix; kidney; lung; mixed; vascular; muscle; blood; pituitary gland; intestine; lymph node; connective tissue; adrenal gland; pancreas; uterus; prostate; mammary gland; liver; spleen; bone marrow; eye; nerve; thymus; stomach; umbilical cord; trachea; bone; thyroid; heart; lymph; ascites; adipose tissue |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (5)
|
AK022948.1 |
Homo sapiens cDNA FLJ12886 fis, clone NT2RP2004041, weakly similar to SYNAPSINS IA AND IB |
P |
|
NM_019108.2 |
Homo sapiens smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG9), mRNA |
PA |
|
AL136606.1 |
Homo sapiens mRNA; cDNA DKFZp564H1322 (from clone DKFZp564H1322) |
PA |
|
BC008869.2 |
Homo sapiens chromosome 19 open reading frame 61, mRNA (cDNA clone MGC:15017 IMAGE:4131601), complete cds |
PA |
|
AK309830.1 |
Homo sapiens cDNA, FLJ99871 |
P |
EST sequences (10 of 386) [Show all sequences]
|
R15751.1 |
Clone IMAGE:53144 |
brain |
3' read |
|
|
R16187.1 |
Clone IMAGE:53144 |
brain |
5' read |
|
|
R17960.1 |
Clone IMAGE:32377 |
brain |
5' read |
|
|
AI076551.1 |
Clone IMAGE:1675612 |
mixed |
3' read |
A |
|
AI092935.1 |
Clone IMAGE:1693135 |
heart |
3' read |
A |
|
AI147274.1 |
Clone IMAGE:1702674 |
brain |
3' read |
A |
|
AI191180.1 |
Clone IMAGE:1739964 |
lung |
3' read |
A |
|
CB110600.1 |
Clone L5HLK1-4-F08 |
liver |
5' read |
P |
|
CB153768.1 |
Clone B1T694954-25-G10 |
brain |
5' read |
P |
|
CB145649.1 |
Clone L11SNU354s1-13-H03 |
liver |
5' read |
P |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
|
|
