> CCR4-NOT transcription complex, subunit 1 (CNOT1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:676082     UniGene Hs.460923     Homo sapiens (human)   CNOT1 Order cDNA clone, Links
CCR4-NOT transcription complex, subunit 1 (CNOT1)

Human protein-coding gene CNOT1. Represented by 925 ESTs from 361 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 676082 - Hs.460923]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_511007.2 PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 8 P. troglodytes 100.0 2375
NP_057368.3 CNOT1 gene product H. sapiens 100.0 2375
XP_003917028.1 PREDICTED: CCR4-NOT transcription complex subunit 1 P. anubis 100.0 2254
XP_535279.4 PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 isoform 1 C. lupus familiaris 100.0 2375
XP_001495291.1 PREDICTED: CCR4-NOT transcription complex subunit 1 E. caballus 100.0 2375
NP_001192968.1 CCR4-NOT transcription complex subunit 1 B. taurus 100.0 2375
XP_004015089.1 PREDICTED: CCR4-NOT transcription complex subunit 1 O. aries 100.0 2375
XP_002711595.1 PREDICTED: CCR4-NOT transcription complex, subunit 1 O. cuniculus 100.0 2374
XP_001102008.2 PREDICTED: CCR4-NOT transcription complex subunit 1-like M. mulatta 100.0 2339
XP_003127000.1 PREDICTED: CCR4-NOT transcription complex subunit 1 S. scrofa 99.9 2374
NP_835179.1 Cnot1 gene product M. musculus 99.8 2370
NP_001128312.1 CCR4-NOT transcription complex subunit 1 R. norvegicus 99.8 2375
NP_001073420.1 cnot1 gene product D. rerio 95.8 2373
NP_001097243.1 Not1, isoform D D. melanogaster 61.4 2500
XP_001692750.1 component of CCR4-NOT transcriptional regulator complex C. reinhardtii 59.9 430
NP_001184889.1 CCR4-NOT transcription complex subunit 1 A. thaliana 57.9 1714
NP_498516.2 Protein LET-711 C. elegans 57.7 1419
XP_960299.1 hypothetical protein NCU04766 N. crassa 47.3 169
Other hits (2 of 47) [Show all]SpeciesId(%)Len(aa)
XP_003431321.1 PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 2 O. anatinus 99.3 2374
XP_001363026.1 PREDICTED: CCR4-NOT transcription complex subunit 1 isoform 1 M. domestica 99.2 2375

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; embryonic tissue; intestine; lung; stomach; placenta; liver; thymus; uncharacterized tissue; kidney; uterus; mixed; pineal gland; lymph node; spleen; adrenal gland; ear; vascular; adipose tissue; larynx; salivary gland; skin; bladder; mouth; prostate; trachea; muscle; eye; mammary gland; cervix; ovary; bone; lymph; ascites; heart; blood; connective tissue; umbilical cord; thyroid; pancreas; bone marrow; pituitary gland; tonsil; ganglia; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16q21
UniSTS entry: Chr 16 D16S2562E
UniSTS entry: Chr 16 A002K05 [Map Viewer]
UniSTS entry: Chr 16 D16S3186
UniSTS entry: Chr 16 D16S2941 [Map Viewer]
UniSTS entry: Chr 16 SHGC-61172
UniSTS entry: Chr 16 RH41889
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (23)

AB023224.2 Homo sapiens mRNA for KIAA1007 protein, partial cds P
BX537840.1 Homo sapiens mRNA; cDNA DKFZp686K24111 (from clone DKFZp686K24111); complete cds PA
AL117492.1 Homo sapiens mRNA; cDNA DKFZp434N241 (from clone DKFZp434N241); partial cds PA
BX647815.1 Homo sapiens mRNA; cDNA DKFZp686L1052 (from clone DKFZp686L1052) PA
NM_206999.2 Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 2, mRNA P
NM_016284.4 Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 1, mRNA PA
CR749237.1 Homo sapiens mRNA; cDNA DKFZp686E0722 (from clone DKFZp686E0722) PA
AF110778.1 Homo sapiens adrenal gland protein AD-005 mRNA, complete cds PA
BC000779.2 Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone IMAGE:3504586), partial cds PA
EF553522.1 Homo sapiens clone DKFZp686O168 CNOT1 (CNOT1) mRNA, complete cds PA
AK056927.1 Homo sapiens cDNA FLJ32365 fis, clone PUAEN1000161, highly similar to Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 2, mRNA P
BC024317.1 Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone IMAGE:3913601), partial cds PA
AL833549.1 Homo sapiens mRNA; cDNA DKFZp686N183 (from clone DKFZp686N183) PA
AL832769.1 Homo sapiens mRNA; cDNA DKFZp686A017 (from clone DKFZp686A017) PA
AK300281.1 Homo sapiens cDNA FLJ61392 complete cds, highly similar to Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 2, mRNA P
AK302495.1 Homo sapiens cDNA FLJ58490 complete cds, highly similar to Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 1, mRNA P
AK075125.1 Homo sapiens cDNA FLJ90644 fis, clone PLACE1004168 P
BC027969.2 Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone IMAGE:5225775) PA
BC011861.2 Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone IMAGE:4310622) A
AK301092.1 Homo sapiens cDNA FLJ61738 complete cds, highly similar to Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 1, mRNA P
NR_049763.1 Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 4, non-coding RNA PA
NM_001265612.1 Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 3, mRNA PA
BC040523.1 Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone MGC:39516 IMAGE:5266600), complete cds PA

EST sequences (10 of 925) [Show all sequences]

R14268.1 Clone IMAGE:28338 brain 5' read
AA975758.1 Clone IMAGE:1591137 kidney 3' read P
AA987879.1 Clone IMAGE:1592790 kidney 3' read A
AA910865.1 Clone IMAGE:1520741 kidney 3' read P
AA922463.1 Clone IMAGE:1551841 uncharacterized tissue 3' read A
AI076896.1 Clone IMAGE:1672159 uncharacterized tissue 3' read
R21483.1 Clone IMAGE:31370 brain 5' read P
AI089676.1 Clone IMAGE:1686396 brain 3' read P
AI091771.1 Clone IMAGE:1694117 heart 3' read
AI094683.1 Clone IMAGE:1670459 brain 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help