> Vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A)
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UGID:674949     UniGene Hs.459790     Homo sapiens (human)   VPS13A Links
Vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A)

Human protein-coding gene VPS13A. Represented by 198 ESTs from 113 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 674949 - Hs.459790]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_150648.2 VPS13A gene product H. sapiens 100.0 3173
XP_001148547.1 PREDICTED: vacuolar protein sorting-associated protein 13A isoform 3 P. troglodytes 99.8 3173
NP_766616.2 Vps13a gene product M. musculus 88.2 3165
NP_001112365.1 vacuolar protein sorting 13 homolog A D. rerio 64.1 3193
NP_001086434.1 vacuolar protein sorting 13 homolog A X. laevis 61.5 930
NP_610299.2 vacuolar protein sorting 13, isoform A D. melanogaster 58.3 362
NP_740899.1 Protein T08G11.1, isoform b C. elegans 55.8 403
Other hits (2 of 37) [Show all]SpeciesId(%)Len(aa)
XP_003911886.1 PREDICTED: vacuolar protein sorting-associated protein 13A, partial P. anubis 98.5 2335
XP_002808150.1 PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A-like M. mulatta 97.9 3173

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; lung; mammary gland; intestine; adipose tissue; prostate; mixed; kidney; uncharacterized tissue; embryonic tissue; uterus; ascites; muscle; liver; pancreas; stomach; spleen; trachea; amniotic fluid; thymus; blood; connective tissue; ovary; eye; placenta; adrenal gland; thyroid; skin; lymph; bone; vascular; umbilical cord; pineal gland; lymph node; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q21
UniSTS entry: Chr 9 D9S1768
UniSTS entry: Chr 9 SHGC-32427 [Map Viewer]
UniSTS entry: Chr 9 SHGC-30336 [Map Viewer]
UniSTS entry: Chr 9 AB055267
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BC041852.1 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:5270397), partial cds PA
AB023203.1 Homo sapiens mRNA for KIAA0986 protein, partial cds P
AK124024.1 Homo sapiens cDNA FLJ42030 fis, clone SPLEN2036953, highly similar to Vacuolar protein sorting 13A P
AJ626859.1 Homo sapiens mRNA for chorein 1D (VPS13A gene) P
AJ608769.1 Homo sapiens mRNA for chorein 2A (CHAC) protein, transcript variant 2A (VPS13A gene) P
AK000273.1 Homo sapiens cDNA FLJ20266 fis, clone HEP00615, highly similar to AB023203 Homo sapiens mRNA for KIAA0986 protein P
NM_001018038.2 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant D, mRNA PA
NM_001018037.1 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant C, mRNA P
AK022967.1 Homo sapiens cDNA FLJ12905 fis, clone NT2RP2004366, weakly similar to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 P
AK027023.1 Homo sapiens cDNA: FLJ23370 fis, clone HEP15944 PA
AB054005.1 Homo sapiens chac mRNA for chorein, complete cds P
AF337532.1 Homo sapiens chorea-acanthocytosis (CHAC) mRNA, complete cds P
NM_033305.2 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant A, mRNA P
NM_015186.3 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant B, mRNA PA
BC020576.1 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:3450315), partial cds PA

EST sequences (10 of 198) [Show all sequences]

AA954429.1 Clone IMAGE:1563457 mixed 3' read P
AA975192.1 Clone IMAGE:1555401 kidney 3' read
BX111825.1 Clone IMAGp998H07441_;_IMAGE:222006 eye P
AI216657.1 Clone IMAGE:1840088 testis 3' read
AI218624.1 Clone IMAGE:1753746 testis 3' read A
AI202451.1 Clone IMAGE:1943144 prostate 3' read P
CB131398.1 Clone L13SNU387-6-D06 liver 5' read
CB104862.1 Clone S9SNU601-38-D12 ascites 5' read
BM422911.1 testis
AI084224.1 Clone IMAGE:1671418 uncharacterized tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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